[HTML][HTML] Applications and potentials of nanopore sequencing in the (epi) genome and (epi) transcriptome era

S Xie, AWS Leung, Z Zheng, D Zhang, C Xiao, R Luo… - The Innovation, 2021 - cell.com
… In the review, we focus on issues related to nanopore direct DNA sequencing and direct
RNA sequencing, so that readers can understand how nanopore sequencing works and how to …

Transcriptome sequencing with nanopore technology for acquiring a deeper understanding of abscisic acid regulation of secondary mechanisms in Salvia miltiorrhiza

X Kuang, S Sun, Y Li, H Zhang, B Guo, Y Li… - Industrial Crops and …, 2022 - Elsevier
… after a longer induction period. To confirm the reliability of our transcriptome data, 14 genes
… results were compared with those obtained from the transcriptome data. As shown in Fig. 2a…

[HTML][HTML] Transcriptome profiling for precision cancer medicine using shallow nanopore cDNA sequencing

A Mock, M Braun, C Scholl, S Fröhling, C Erkut - Scientific Reports, 2023 - nature.com
… we termed ShaNTi (Shallow Nanopore sequencing for Transcriptomics) (Figure S1). In
addition to processed data, ShaNTi generates detailed statistics of sequencing depth per run, …

Genomics in the long-read sequencing era

EL van Dijk, D Naquin, K Gorrichon, Y Jaszczyszyn… - Trends in Genetics, 2023 - cell.com
… focusing on high-resolution sequencing of genomes and transcriptomes and the direct
detection of … of human genetic variation, transcriptomics, and epigenetics for the coming years. …

[HTML][HTML] Nanopore sequencing in blood diseases: a wide range of opportunities

CF Minervini, C Cumbo, P Orsini, L Anelli… - Frontiers in …, 2020 - frontiersin.org
… In the last years, several nanopore sequencing approaches have … perspectives of this
technology in the precision medicine era. … However, the main drawback of nanopore transcriptome

[HTML][HTML] Portable nanopore-sequencing technology: Trends in development and applications

P Chen, Z Sun, J Wang, X Liu, Y Bai, J Chen… - Frontiers in …, 2023 - frontiersin.org
… -reads or align RNA-seq reads to transcriptomes in addition to aligning reads to the genome.
… This tendency launched a new era that laptop computers, tablets, and even smartphones …

[HTML][HTML] In-depth temporal transcriptome profiling of an alphaherpesvirus using nanopore sequencing

D Tombácz, B Kakuk, G Torma, Z Csabai, G Gulyás… - Viruses, 2022 - mdpi.com
… In this work, a long-read sequencing (LRS) technique based on the Oxford Nanopore … 1
(BoHV-1) lytic transcriptome across a 12-h infection period. Amplification-based LRS techniques …

Transcriptome landscape of the developing olive fruit fly embryo delineated by Oxford Nanopore long-read RNA-Seq

A Bayega, S Oikonomopoulos, E Zorbas, YC Wang… - BioRxiv, 2018 - biorxiv.org
… Our sampling captures this period as it covers the events beginning at oviposition (1 hpo)
up to the beginning of blastoderm cellularization (6 hpo) when pole cells are already …

Nanopore sequencing technology and its applications

P Zheng, C Zhou, Y Ding, B Liu, L Lu, F Zhu… - MedComm, 2023 - Wiley Online Library
… generated in a short period of time has … Transcriptome analysis using nanopore sequencing
has revealed the absence of a furin-like cleavage site-encoding portion in the transcriptome

Performance of nanopore and illumina metagenomic sequencing for pathogen detection and transcriptome analysis in infantile central nervous system infections

K Horiba, Y Torii, Y Aizawa… - Open Forum …, 2022 - academic.oup.com
… the transcriptome for host immune responses during infection in a single cerebrospinal fluid
(CSF) sample using 2 different next-generation sequencing (NGS) platforms, Nanopore and …