[HTML][HTML] Nanopore sequencing resolves elusive long tandem-repeat regions in mitochondrial genomes

L Kinkar, RB Gasser, BL Webster, D Rollinson… - International Journal of …, 2021 - mdpi.com
sequencing and informatic approach can overcome this problem. We employed Oxford
Nanopore technology to sequence … to define the complete mt non-coding region(s). Using long-…

[HTML][HTML] Metabarcoding using nanopore sequencing enables identification of diverse and zoonotic vector-borne pathogens from neglected regions: A case study …

LG Huggins, U Namgyel, P Wangchuk, U Atapattu… - One Health, 2024 - Elsevier
… All nanopore sequencing data produced in this study are available from the NCBI
BioProject database BioProjectID: PRJNA1066489; specifically, Sequence Read Archive (SRA) …

Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH)

T Gabrieli, H Sharim, D Fridman, N Arbib… - Nucleic acids …, 2018 - academic.oup.com
… However, due to the large size of this gene (∼80 000 bp), current enrichment methods focus
on the coding sequence, while neglecting intronic and regulatory regions. An exception is a …

[HTML][HTML] On site DNA barcoding by nanopore sequencing

M Menegon, C Cantaloni, A Rodriguez-Prieto… - PLoS …, 2017 - journals.plos.org
… , we tested the Nanopore DNA sequencing platform developed by Oxford Nanopore Technologies
(… We examined the CO1 gene and 16S region of an amphibian (the big-eyed tree frog, …

Nanopore‐based protein sequencing using biopores: Current achievements and open challenges

A Asandei, G Di Muccio, I Schiopu, L Mereuta… - Small …, 2020 - Wiley Online Library
sequencing at single amino acid resolution, include: i) the dimension of the sensitivity region
inside the nanopore, … A preliminary analysis neglecting EOF and dielectrophoresis was …

[HTML][HTML] Nanopore sequencing of a monkeypox virus strain isolated from a pustular lesion in the Central African Republic

M Vandenbogaert, A Kwasiborski, E Gonofio… - Scientific reports, 2022 - nature.com
… Monkeypox is an emerging and neglected zoonotic disease whose number of reported cases
has … The absence of this 95 bp region in this reference sequence explains the absence of a …

[HTML][HTML] Sequencing DNA with nanopores: Troubles and biases

C Delahaye, J Nicolas - PloS one, 2021 - journals.plos.org
Nanopore sequencing error biases on both bacterial and human DNA reads. We found that,
although Nanopore sequencing is … the sequencing accuracy of low complexity regions by …

[HTML][HTML] Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants

N Riaz, P Leung, K Barton, MA Smith, S Carswell… - BMC genomics, 2021 - Springer
… public database sequences may disappear for neglected tropical infections, thereby enabling
… , nanopore sequencing itself has a high error rate, especially in homo-polymeric regions. …

Nanopore Sequencing Significantly Improves Genome Assembly of the Protozoan Parasite Trypanosoma cruzi

F Díaz-Viraqué, S Pita, G Greif… - Genome biology and …, 2019 - academic.oup.com
… One of these regions is represented in figure 1D, where Nanopore reads uninterruptedly …
region where coverage falls to zero, causing the break of contiguity in the assembly. Nanopore

[HTML][HTML] Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing

A Scheunert, M Dorfner, T Lingl, C Oberprieler - PLoS One, 2020 - journals.plos.org
… , also because exceptionally high coverage in only a subset of regions might cause problems
during Nanopore de novo assembly (see section 4.6.). A suitable alternative might be "…