Nanopore sequencing of full-length circRNAs in human and mouse brains reveals circRNA-specific exon usage and intron retention

K Rahimi, MT Venø, DM Dupont, J Kjems - BioRxiv, 2019 - biorxiv.org
regions, but without crossing the BSJ, are also likely to originate from the circRNA. With this
assumption, 25.1% and 26.2% of the sequenced reads map to circRNA regions (… neglected

[HTML][HTML] De novo assembled mitogenome analysis of Trichuris trichiura from Korean individuals using nanopore-based long-read sequencing technology

JO Delaluna, H Kang, YY Chang, MJ Kim… - PLoS neglected …, 2023 - journals.plos.org
… the long-read sequencing technology of Oxford Nanopore … to six times longer AT-rich
regions that were not reported by … -coding region, which could be accomplished by sequencing

[HTML][HTML] Long-read sequencing improves the detection of structural variations impacting complex non-coding elements of the genome

G Begum, A Albanna, A Bankapur, N Nassir… - International Journal of …, 2021 - mdpi.com
… in the protein-coding genic regions along chromosomes, we … -coding elements, were
neglected and remain poorly understood … of all samples sequenced by nanopore sequencing. (a) …

[HTML][HTML] Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing

KI Kamathewatta, RN Bushell, ND Young… - PLoS …, 2019 - journals.plos.org
… the assembly and analysis of contiguous genomic sequence regions containing several,
co-… produced by the Oxford Nanopore Technologies MinION portable sequencer [14] readily …

Rapid absolute quantification of pathogens and ARGs by nanopore sequencing

Y Yang, Y Che, L Liu, C Wang, X Yin, Y Deng… - Science of the Total …, 2022 - Elsevier
… metagenomic sequencing with cellular spike-in to facilitate the … Nanopore sequencing-based
quantification results for both … besides the ARG-mapped regions were used to track the …

Inverted duplicate DNA sequences increase translocation rates through sequencing nanopores resulting in reduced base calling accuracy

P Spealman, J Burrell, D Gresham - Nucleic Acids Research, 2020 - academic.oup.com
… that genomic regions containing inverted duplicated DNA sequence generate … region with
the length of the preceding region that has a typical phred score for all independent sequence

[HTML][HTML] Next generation biosecurity: Towards genome based identification to prevent spread of agronomic pests and pathogens using nanopore sequencing

JE Frey, B Frey, D Frei, S Blaser, M Gueuning… - PloS one, 2022 - journals.plos.org
… a pair of primers matching regions flanking the targeted … products) from many different
geographical regions [8]. A second … (WGA) [17] and Oxford Nanopore MinION sequencing [18]. …

Nanopore sequencing from extraction-free direct PCR of dried serum spots for portable hepatitis B virus drug-resistance typing

S Astbury, MMCN Soares, E Peprah, B King… - Journal of Clinical …, 2020 - Elsevier
… PCR amplicons generated in this study are shown in orange, and the crucial RT region
associated with treatment resistance mutations (aa169 – 250) is shown in red. The F1 + R1 …

Unveiling the microscopic mechanism of current variation in the sensing region of the MspA nanopore for DNA sequencing

M Yu, W Si, T Zeng, C Chen, X Lin, Z Ji… - The Journal of …, 2021 - ACS Publications
… MspA nanopore constriction, it is also found that the region … across the nanopore constriction
compared to other regions. … of low-cost and high-throughput nanopore DNA sequencing. …

[HTML][HTML] Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing

RR Wick, LM Judd, KE Holt - PLOS Computational Biology, 2023 - journals.plos.org
sequence is complete and contains no errors. While this has been difficult to achieve in the
past, improvements in long-read sequencing, … of Oxford Nanopore Technologies long reads …