Selective single molecule sequencing and assembly of a human Y chromosome of African origin

LFK Kuderna, E Lizano, E Julià… - Nature …, 2019 - nature.com
… Mammalian Y chromosomes are often neglected from … DNA on a MinION nanopore sequencing
device. Our approach … of the resolved heterochromatic regions, and multiple instances …

Nanopores: A journey towards DNA sequencing

M Wanunu - Physics of life reviews, 2012 - Elsevier
… as an hourglass shape, but that neglects access resistance and surface charge (as apparently
… Based on these measurements it is reasonable to estimate that the β-barrel region of the …

A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore

M Mohamed, NTM Dang, Y Ogyama, N Burlet, B Mugat… - Cells, 2020 - mdpi.com
region of the ZAM insertions the fasta sequence was extracted (using bedtools getfasta) and
compared with the ZAM sequence … variants that had been neglected during the assembling …

Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli

N Gonzalez-Escalona, MA Allard, EW Brown… - PLoS …, 2019 - journals.plos.org
regions using Phaster [38], of which: 14 regions were intact, 3 regions were incomplete, and
3 regions … Here, we tested the use of such a technique (i.e., Nanopore sequencing) to obtain …

Early MinION nanopore single-molecule sequencing technology enables the characterization of hepatitis B virus genetic complexity in clinical samples

V Sauvage, L Boizeau, D Candotti, M Vandenbogaert… - PloS one, 2018 - journals.plos.org
… of amplicons of various sizes covering several sub-genomic regions of interest of the viral …
Nanopore sequencing of amplified DNA from sample B5584 produced 4,893 sequence reads …

Nanopore sequencing and Hi-C scaffolding provide insight into the evolutionary dynamics of transposable elements and piRNA production in wild strains of …

CE Ellison, W Cao - Nucleic Acids Research, 2020 - academic.oup.com
sequencing data to assess natural variation in TE content and piRNA abundance between
these strains. We find that, while nanopore sequencing … zero coverage at these regions for the …

[PDF][PDF] Potential applications of nanopore sequencing for forensic analysis

CL Hall, RR Zascavage, FJ Sedlazeck… - Forensic science …, 2020 - researchgate.net
… Y-chromosome centromere, which has previously been neglected due to the presence of
long … , enabling direct ligation of nanopore sequencing adapters to target regions. Using the …

A single-molecule nanopore sequencing platform

JY Zhang, Y Zhang, L Wang, F Guo, Q Yun, T Zeng… - bioRxiv, 2024 - biorxiv.org
… By screening a large number of mutants (especially in the sensor region) and combining …
, the effect of electroosmotic flow was neglected. Different trans-membrane potentials were …

Intergenic Spacer Region (IGS) Sequence Analysis by Nanopore Sequencing of Cryptococcus Species

GA Morrison - 2020 - search.proquest.com
nanopore sequencing, it is now possible to utilize the IGS region for fungal identification. The
… The most anticipated area of fourth generation sequencing is nanopore sequencing. The …

… sequencing and genetic diversity of severe fever with thrombocytopenia syndrome virus using multiplex PCR-based nanopore sequencing, Republic of Korea

J Lee, K Park, J Kim, SH Lee, GY Lee… - PLOS Neglected …, 2022 - journals.plos.org
… were 99.43% for the L segment, 99.47% for the M segment, and 99.20% for the S segment,
with over 50× depth of coverage at all regions for each segment after one hour of nanopore