[HTML][HTML] Nanopore-based metagenomics reveal a new Rickettsia in Europe

SP Nelson, K Ergunay, BP Bourke… - Ticks and Tick-borne …, 2024 - Elsevier
… a non-targeted metagenomic approach by nanopore sequencing (NS) and commonly used
PCR … In our study, sequences of varying lengths and spanning several genomic regions were …

Clinical application of nanopore-targeted sequencing technology in bronchoalveolar lavage fluid from patients with pulmonary infections

J Ye, K Huang, Y Xu, N Chen, Y Tu, J Huang… - Microbiology …, 2024 - Am Soc Microbiol
sequencing technology that combines ultra-multiplex PCR amplification with high-throughput
nanopore sequencing, … nucleic acid molecules pass through nanopores (19). With its rapid …

[HTML][HTML] Single-molecule methylation profiles of cell-free DNA in cancer with nanopore sequencing

BT Lau, A Almeda, M Schauer, M McNamara, X Bai… - Genome Medicine, 2023 - Springer
… For promoter region analysis, we selected a window beginning 2 kb upstream and 500 bp …
called to be either type (and thus can be neglected from the final analysis). We varied the two …

[HTML][HTML] A comparative assessment of conventional and molecular methods, including MinION nanopore sequencing, for surveying water quality

K Acharya, S Khanal, K Pantha, N Amatya… - Scientific reports, 2019 - nature.com
sequencing results obtained with the low-cost, portable next generation sequencer MinION
from Oxford Nanopore … MiSeq sequencing results. However, method validation by amplicon …

[HTML][HTML] Prediction of Antibiotic Susceptibility Profiles of Vibrio cholerae Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon

V Fuesslin, S Krautwurst, A Srivastava… - Frontiers in …, 2022 - frontiersin.org
… applicability of whole genome sequencing for the prediction … from long and short sequencing
reads. By correlating the … the Oxford Nanopore Technologies MinION sequencing platform—…

[HTML][HTML] Genotyping of familial Mediterranean fever gene (MEFV)—Single nucleotide polymorphism—Comparison of Nanopore with conventional Sanger sequencing

J Schmidt, S Berghaus, F Blessing, H Herbeck… - PLoS …, 2022 - journals.plos.org
… To evaluate the performance of Nanopore sequencing for SNP genotyping, we performed
amplicon sequencing of selected MEFV regions in 47 clinical samples using a MinION …

[HTML][HTML] Retrospective Detection and Complete Genomic Sequencing of Canine morbillivirus in Eurasian Otter (Lutra lutra) Using Nanopore Technology

Z Lanszki, J Lanszki, GE Tóth, S Zeghbib, F Jakab… - Viruses, 2022 - mdpi.com
… In terms of virological examinations, the Eurasian otter is a neglected predator species; it is
… in two different years in the same region in Hungary. Increased efforts and extended research …

[HTML][HTML] Using de novo assembly to identify structural variation of eight complex immune system gene regions

JY Zhang, H Roberts, DSC Flores… - PLoS computational …, 2021 - journals.plos.org
… long-read sequencing platforms from PacBio and Oxford Nanopore, supplemented … sequence
complexity in the T cell receptor α, δ and γ regions (which contain < 2% repeat sequence

[PDF][PDF] Nanopore sequencing reveals that DNA replication compartmentalisation dictates genome stability and instability in Trypanosoma brucei

M Krasiļņikova, CA Marques, EM Briggs, C Lapsley… - biorxiv.org
… brucei may allow increased understanding of repetitive regions … Using Nanopore sequencing,
we performed de novo assembly … centromeric repeat regions in the Nanopore assembly by …

[HTML][HTML] Chromosome-scale genome sequencing, assembly and annotation of six genomes from subfamily Leishmaniinae

H Almutairi, MD Urbaniak, MD Bates, N Jariyapan… - Scientific Data, 2021 - nature.com
… Leishmaniasis is a neglected tropical disease. It is … Due to the low quality scores in
Nanopore long reads, we mapped … We identified and classified repeat regions in the polished …