[HTML][HTML] An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings

D Tshiabuila, W Choga, SE James, T Maponga… - medRxiv, 2024 - ncbi.nlm.nih.gov
… -C regions, and at the start of the C region (Figure 5B). The recombination region count matrix
… of specific genomic regions, particularly the end of the pol region, the X region, the pre-C …

Insights into protein sequencing with an α-Hemolysin nanopore by atomistic simulations

G Di Muccio, AE Rossini, D Di Marino, G Zollo… - Scientific reports, 2019 - nature.com
… Finally, we discuss the possibility to modify the α-Hemolysin nanopore, cutting a portion of
the barrel region close to the trans side, to reduce spurious signals and, hence, to enhance …

MinION Nanopore-based detection of Clavibacter nebraskensis, the corn Goss's wilt pathogen, and bacteriomic profiling of necrotic lesions of naturally-infected leaf …

R Xu, L Adam, J Chapados, A Soliman, F Daayf… - PLoS …, 2021 - journals.plos.org
Nanopore sequencing enables direct sequencing of native DNA by measuring voltage
changes when a single DNA molecule passes through a protein Nanopore … genomic regions for …

DeepNano: deep recurrent neural networks for base calling in MinION nanopore reads

V Boža, B Brejová, T Vinař - PloS one, 2017 - journals.plos.org
… caller for the MinION nanopore sequencing platform. The MinION device by Oxford Nanopore
[1]… the correct output sequence; more specifically, we only know the region of the reference …

[HTML][HTML] Seasonal dynamics, Leishmania diversity, and nanopore-based metabarcoding of blood meal origins in Culicoides spp. in the newly emerging focus of …

C Promrangsee, S Sriswasdi… - Parasites & …, 2024 - parasitesandvectors.biomedcentral …
… also significantly negative on regional and country-wide … by Cytb-PCR, nanopore amplicon
sequencing was performed on all … prevention and control of this neglected parasitic disease. …

Complete genome sequencing of field isolates of peste des petits ruminants virus from Tanzania revealed a high nucleotide identity with lineage III PPR viruses

E Kinimi, M Mahapatra, T Kgotlele, MR Makange… - Animals, 2021 - mdpi.com
… collection of sufficient data to assess the robustness of nanopore sequencing technology. …
This region is an extremely difficult PCR target to sequence due to repetitive sequences and …

Nanopore direct RNA sequencing maps an Arabidopsis N6 methyladenosine epitranscriptome

MT Parker, K Knop, AV Sherwood, NJ Schurch… - BioRxiv, 2019 - biorxiv.org
… data, the location of oligo(A) hexamers within Arabidopsis coding sequence (CDS)
regions (Araport11) was determined and reads that terminated within a 20 nt window of each …

Nanopore sequencing technology and Internet of living things: A big hope for U-healthcare

K Raza, S Qazi - Sensors for health monitoring, 2019 - Elsevier
… ONT’s biosensor also works for single molecules by neglecting the need for calibration, … ,
aiding in its accession from any geographical region. Furthermore it also provides a common …

Using a mobile nanopore sequencing lab for end-to-end genomic surveillance of Plasmodium falciparum: A feasibility study

A Holzschuh, A Lerch, BS Fakih, SM Aliy… - PLOS Global Public …, 2024 - journals.plos.org
… falciparum nanopore sequencing in endemic sites using a mobile laboratory, targeting key
nanopore sequencing in endemic countries to accelerate malaria control and elimination. …

Plasmonic nanopores for trapping, controlling displacement, and sequencing of DNA

M Belkin, SH Chao, MP Jonsson, C Dekker… - ACS …, 2015 - ACS Publications
… to a 1 base pair displacement of the block is, neglecting the end-of-the-block effects, …
was generated by assigning 0 and 1 to regions of space occupied by the solution and the …