[HTML][HTML] Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

AM Smith, M Jain, L Mulroney, DR Garalde, M Akeson - PloS one, 2019 - journals.plos.org
… Here we describe direct MinION nanopore sequencing of individual, … Nanopore ionic current
traces that deviated from canonical … Blue regions in the body of the panel denote agreement …

Nanopore-based targeted next-generation sequencing of tissue samples for tuberculosis diagnosis

W Gao, C Yang, T Wang, Y Guo, Y Zeng - Frontiers in Microbiology, 2024 - frontiersin.org
… This study evaluated the utility of nanopore-based targeted next-generation sequencing (tNGS)
for diagnosing TB in tissue samples, and compared its efficacy with other established …

[引用][C] Nanopore sequencing significantly improves genome assembly of the protozoan parasite

F Díaz-Viraqué, S Pita, G Greif, RCM de Souza… - 2019

[HTML][HTML] Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

RR Wick, LM Judd, KE Holt - PLoS computational biology, 2018 - journals.plos.org
sequencing of multiple barcoded DNA samples on a single flow cell, has made Oxford Nanopore
sequencing … To identify a region from each that was entirely unique to that genome, we …

[PDF][PDF] Nanopore sequencing approaches to study mice gut microbiota under ethanol exposure in utero

CP Roussado - 2022 - research.brighton.ac.uk
… The nanopore sequencing optimization results … region used for sequencing. Afterwards,
the optimized 16S rRNA gene-targeted nanopore sequencing was performed to sequence DNA …

Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs

W Kot, NS Olsen, TK Nielsen, G Hutinet… - Nucleic acids …, 2020 - academic.oup.com
… Using the CRISPR-Cas9 genome editing tool combined with the Nanopore Sequencing (…
The modification is also site-specific and is found mainly in two separate DNA sequence

[HTML][HTML] Nanopore-Based Surveillance of Leishmania Parasites in Culicoides Latrielle (Diptera: Ceratopogonidae) Caught from the Affected Community and Tham …

R Ampol, P Somwang, P Khositharattanakool… - Insects, 2024 - mdpi.com
… applied nanopore sequencing technology to assess the infection prevalence and regional
genetic … of this neglected disease, particularly in endemic regions of Northern Thailand. …

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

A Benítez-Páez, KJ Portune, Y Sanz - Gigascience, 2016 - academic.oup.com
nanopore-based sequencing produces reads with lower per-base accuracy compared with
other platforms, the MinION™ DNA sequencer is … coverage regions. Therefore, increasing the …

Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors

M Wanunu, T Dadosh, V Ray, J Jin… - Nature …, 2010 - nature.com
… A small region of a freestanding SiN membrane supported … To detect a specific miRNA with
a nanopore, a sequence-specific … In equation (1) in our geometrical model, we neglected the …

Nanopore-based analysis unravels the genetic landscape and phylogenetic placement of human-infecting Trichuris species in Côte d'Ivoire, Tanzania, Uganda, and …

N Rahman, MA Bär, J Dommann, E Hürlimann… - bioRxiv, 2024 - biorxiv.org
… , we used nanopore-based full-length ITS2 rDNA sequencing to … significance and is considered
a Neglected Tropical Disease (1)… Here, we utilized the nuclear ITS2 region to molecularly …