… We also simulated the effect of noisy high-throughput experiments on the accuracy of
transcriptomics and proteomics integrative analysis. To simulate this source of network inaccuracy, …

… into the integrated molecular mechanisms of pathological versus physiological cardiac
hypertrophy by representing transcriptomic and proteomic data as biological networks. The …

… different PTMs; this complexity forces us to change our classical view of signalling networks
from a linear information flow into a highly intricate and multidirectional regulatory network. …

… built comprehensive MPSS and proteomic databases. The integrated mRNA and protein …
onto extant physiologic networks, creating perturbation networks that reflect prostate cancer …

… transcriptomic profiling data, we integrated the proteomic and transcriptomic data of … network
to show the combined regulatory network of intervertebral disc degeneration. In the network, …

… BIANA creates and analyzes biological networks and GUILD prioritizes the biomolecules
in the network according to their relevance to a given phenotype. We enriched the network …

… To gain further insight into the integrated cellular response to apoptosis, … network analysis
to the differentially expressed list of proteins identified by our previous quantitative proteomic …

… the proteome is strictly … proteomic study comparing metastatic and nonmetastatic cell lines
revealed a multilayered transforming growth factor β (TGFβ) regulatory network by integrating …

… for metabolomics and proteomics, respectively. In order to build the network, we needed to
have the same number of biological samples for metabolomics and proteomics. The drought …

… 6) and also when we cross-referenced the turnover networks with a prior data set on …
The results are robust to network construction parameters, and are reproduced when …