Variable prediction accuracy of polygenic scores within an ancestry group

H Mostafavi, A Harpak, I Agarwal, D Conley… - elife, 2020 - elifesciences.org
ancestry group (ie, when there are negligible differences in linkage disequilibrium or in
causal alleles frequencies), the prediction accuracy of polygenic scorespolygenic scores and …

Analysis of polygenic risk score usage and performance in diverse human populations

L Duncan, H Shen, B Gelaye, J Meijsen… - Nature …, 2019 - nature.com
polygenic scores in different ancestry groups (above), we next assessed the performance of
polygenic scores in multiple ancestry groups… exclusively) European ancestry individuals 42 , …

On cross-ancestry cancer polygenic risk scores

LG Fritsche, Y Ma, D Zhang, M Salvatore, S Lee… - PLoS …, 2021 - journals.plos.org
… To evaluate if the increased risk is observable with increasing score or only present in the
tails of the distribution, we stratified the PRS, again standardized within each ancestry group, …

Polygenic scoring accuracy varies across the genetic ancestry continuum

Y Ding, K Hou, Z Xu, A Pimplaskar, E Petter, K Boulier… - Nature, 2023 - nature.com
… within the traditionally defined genetic ancestry group. For example, in ATLAS we find that
501 of 504 (84 traits across 6 GIA clusters) trait–ancestry pairs have a significant associations …

Theoretical and empirical quantification of the accuracy of polygenic scores in ancestry divergent populations

Y Wang, J Guo, G Ni, J Yang, PM Visscher… - Nature …, 2020 - nature.com
… The European ancestry group was further … -ancestry was quantified and a reference group
in which we predicted the accuracy of PGS. A thorough description of how these groups were …

Optimal strategies for learning multi-ancestry polygenic scores vary across traits

B Lehmann, M Mackintosh, G McVean… - Nature …, 2023 - nature.com
… To investigate the effect of sample size and ancestry composition on polygenic score
for African-ancestry groups, given that predictive accuracy using European-ancestry PGS is …

Polygenic scoring accuracy varies across the genetic ancestry continuum in all human populations

Y Ding, K Hou, Z Xu, A Pimplaskar, E Petter, K Boulier… - bioRxiv, 2022 - biorxiv.org
ancestry group: European, East Asian, and African ancestry groups utilize PCs 1 and 2, the
Admixed American group use PCs 2 and 3, and the South Asian group use PCs 4 and 5. In …

Polygenic risk score for schizophrenia is more strongly associated with ancestry than with schizophrenia

D Curtis - Psychiatric genetics, 2018 - journals.lww.com
… The PRS cannot be regarded as simply a measure of the polygenic contribution to risk of
schizophrenia and clearly contains a strong ancestry component. It is possible that this could …

Explicit modeling of ancestry improves polygenic risk scores and BLUP prediction

CY Chen, J Han, DJ Hunter, P Kraft… - Genetic …, 2015 - Wiley Online Library
… for ancestry in the polygenic model using principal components (PCs), while incorporating
associations between ancestry … of ancestry in this fashion can improve polygenic prediction …

[HTML][HTML] Polygenic risk scores for diverse ancestries: making genomic medicine equitable

IJ Kullo, O Dikilitas - Journal of the American College of Cardiology, 2020 - jacc.org
… was less strongly associated with African ancestry individuals (HRs 1.53 vs. … ancestry-specific
PRS CHD . There is a particular need for such scores in South Asians, an ancestry group