Viruses are a dominant driver of protein adaptation in mammals

D Enard, L Cai, C Gwennap, DA Petrov - elife, 2016 - elifesciences.org
proteins or affects a broad array of virus-interacting proteins is unknown. Here, we analyze
adaptation in ~1300 virus-interacting proteins manually curated from a set of 9900 proteins

The impact of protein architecture on adaptive evolution

AF Moutinho, FF Trancoso… - Molecular biology and …, 2019 - academic.oup.com
protein functional classes, with genes encoding for protein biosynthesis and degradation
signaling exhibiting the fastest rates of protein adaptation. … variants driving protein adaptive …

Diversity in the origins of proteostasis networks—a driver for protein function in evolution

ET Powers, WE Balch - Nature reviews Molecular cell biology, 2013 - nature.com
… The proteostasis network is a driver of evolvability, facilitating both adaptation and natural
selection by closely managing the link between the phenotype and the genotype to insure …

Soft sweeps are the dominant mode of adaptation in the human genome

DR Schrider, AD Kern - Molecular biology and evolution, 2017 - academic.oup.com
… The degree to which adaptation in recent human evolution shapes genetic variation … account
for the vast majority of recent human adaptation. Surprisingly, our results also suggest that …

Development of a comprehensive genotype-to-fitness map of adaptation-driving mutations in yeast

S Venkataram, B Dunn, Y Li, A Agarwala, J Chang… - Cell, 2016 - cell.com
… Here, we used a DNA barcoding approach to generate the genotype-to-fitness map for
adaptation-driving mutations from a Saccharomyces cerevisiae population experimentally …

Exploiting selection at linked sites to infer the rate and strength of adaptation

LH Uricchio, DA Petrov, D Enard - Nature ecology & evolution, 2019 - nature.com
… that virus-interacting proteins undergo adaptation that is both … most adaptation in human
proteins is weakly beneficial, … The underlying processes driving weak and strong adaptation

Protein stability and molecular adaptation to extreme conditons

R Jaenicke - European Journal of Biochemistry, 1991 - Wiley Online Library
Proteins, due to the delicate balance of stabilizing and destabilizing interactions, are only …
Adaptation to extreme environments tends to shift the ‘mesophilic’ characteristics of proteins to …

High rate of adaptation of mammalian proteins that interact with Plasmodium and related parasites

ER Ebel, N Telis, S Venkataram, DA Petrov… - PLoS genetics, 2017 - journals.plos.org
… as a dominant driver of adaptation in … protein adaptation (p ≥ 0.17; S3 Fig). This indicates
that a high rate of citation for PPIPs is not statistically associated with their rate of adaptation. …

The dynamic and stress-adaptive signaling hub of 14-3-3: emerging mechanisms of regulation and context-dependent proteinprotein interactions

KL Pennington, TY Chan, MP Torres, JL Andersen - Oncogene, 2018 - nature.com
… 3ζ, which has been extensively characterized as a driver of pro-survival signaling. However,
… role of 14-3-3 proteins in supporting cellular adaptation to conditions in which mTOR activity …

Allelic variation in Salmonella: an underappreciated driver of adaptation and virulence

M Yue, DM Schifferli - Frontiers in microbiology, 2014 - frontiersin.org
… syringae can express three YopJ/YopP homologous proteins with various alleles that induce
host-adapted hypersensitive responses in different plants. Thus, whereas allelic variation of …