pySBOL3: SBOL3 for python programmers

T Mitchell, J Beal, B Bartley - ACS synthetic biology, 2022 - ACS Publications
… Our goal from the outset was to keep pySBOL3 focused on representing SBOL3 constructs.
The prior libSBOL and pySBOL (a SWIG wrapper on libSBOL) had many convenience …

Excel–SBOL Converter: Creating SBOL from Excel Templates and Vice Versa

J Mante, J Abam, SP Samineni, IM Pötzsch… - ACS synthetic …, 2023 - ACS Publications
… We have presented two Python converter libraries: Excel-to-SBOL … This allows both SBOL2
and SBOL3 documents to be … pySBOL2 and pySBOL3 are libraries for reading, writing, and …

Standardized Representation of Parts and Assembly for Build Planning

J Beal, V Selvarajah, G Chambonnier… - ACS synthetic …, 2023 - ACS Publications
… We begin with a brief review of key SBOL3 concepts and notation used in the representation…
using the SBOL3 standard in Python with the SBOL-utilities and pySBOL3 libraries. (14) …

IWBDA 2021: An Ongoing Journey to Shape the Future of Synthetic Biology Using Bio-Design Automation

P Vaidyanathan - ACS Synthetic Biology, 2023 - ACS Publications
There is a phase in every field of science where it transforms from being a nascent field filled
with promise, hype, and potential to a juggernaut that is actively transforming our lives and …

pyBrick-DNA: A Python-Based Environment for Automated Genetic Component Assembly

GM Cavero Rozas, JMC Mandujano… - Journal of …, 2023 - liebertpub.com
Genetic component assembly is key in the simulation and implementation of genetic circuits.
Automating this process, thus accelerating prototyping, is a necessity. We present pyBrick-…

Genetic Network Design Automation with LOICA

G Vidal, C Vitalis, T Matúte, I Núñez, F Federici… - … Biology: Methods and …, 2024 - Springer
… This chapter introduces Logical Operators for Integrated Cell Algorithms (LOICA), a Python
package used for designing, modeling, and characterizing genetic networks using a simple …

Role of synthetic biology to build a sustainable vaccine industry

SB Gottumukkala, P Malakar, A Palanisamy - Bioreactor Design Concepts …, 2024 - Elsevier
pySBOL3 A Python library that allows programmers to create and edit SBOL3 documents,
which provides a data model for the representation of synthetic biology information across …

Exergy Analysis of a 600 MWe Oxy-combustion Pulverized-Coal-Fired Power Plant

J Xiong, H Zhao, C Zheng - Energy & Fuels, 2011 - ACS Publications
In an oxy-combustion pulverized-coal-fired power plant (PC), a high CO 2 content flue gas
could be obtained, and this allows CO 2 sequestration in an efficient and energy-saving way. …

Decoding Genetic Circuit Failures: Analyzing Static and Dynamic Failures in Genetic Circuitry

LSM Buecherl - 2024 - search.proquest.com
… v I extend my gratitude to the developers of the Synthetic Biology Open Language, including
but not limited to Georgie Hau Sørensen and Gonzalo Vidal, as well as the developers of …

Supramolecular composite materials from cellulose, chitosan, and cyclodextrin: facile preparation and their selective inclusion complex formation with endocrine …

S Duri, CD Tran - Langmuir, 2013 - ACS Publications
We have successfully developed a simple one-step method of preparing high-performance
supramolecular polysaccharide composites from cellulose (CEL), chitosan (CS), and (2,3,6-tri…