… The study of rates of nucleotide substitution in RNA viruses is central to our … analysis of
substitution rates in 50 RNA viruses using a recently developed maximum likelihood phylogenetic …

… quantitative analysis allows for a deeper understanding of the evolutionary dynamics of the
considered RNA viruses, … In each phylogenetic tree, we use a color code to visually identify …

… We have performed a comprehensive phylogenetic analysis of the extent of recombination
in 79 gene sequence alignments from 35 negative-sense RNA viruses. In only five …

… highest possible resolution for phylogenetic studies. The rapidity … quantitative analysis of
the interaction between the ecological and evolutionary dynamics of all circulating RNA viruses …

… groups revealed at the qualitative level during construction of the multiple alignments. We …
An important corollary of the phylogenetic analysis of the positive-strand RNA virus RdRps is …

… Phylogenetic analysis of sequenced RT-PCR products showed segregation into three …
amounts of positive- and negative-sense viral RNA were quantified by hot-started strain-specific …

… differentiate the phylogenies of HIV and HCV from other RNA viruses. We obtained the same
qualitative results … We applied this phylogenetic tree kernel to our collection of RNA virus …

… They incorporated secondary host affiliations hitherto ignored by phylogenetic studies. This
may turn out to be an important distinction, but before introducing another level of complexity …

… of RNA virus evolution in general. In addition, we attempt to provide a quantitative measure
… the pattern shown in figure 4a is not the result of estimation bias or phylogenetic tree shape. …

… RNA virus, established surveillance of circulating viral strains … by quantitative RT-PCR (qRT-PCR)
against a viral RNA copy … However, this analysis could not take into account how long …