Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

AL Greninger, SN Naccache, S Federman, G Yu… - Genome medicine, 2015 - Springer
… To our knowledge, this is the first time that nanopore sequencing has been used for real-time
metagenomic detection of pathogens in complex, high-background clinical samples in the …

Same-day genomic and epigenomic diagnosis of brain tumors using real-time nanopore sequencing

P Euskirchen, F Bielle, K Labreche… - Acta …, 2017 - Springer
… Here, we demonstrate that real-time molecular genomics using nanopore sequencing is both
fast … Nanopore sequencing interprets changes in ionic currents observed when single DNA …

[HTML][HTML] Real-time DNA sequencing in the Antarctic dry valleys using the Oxford Nanopore sequencer

SS Johnson, E Zaikova, DS Goerlitz, Y Bai… - Journal of …, 2017 - ncbi.nlm.nih.gov
… offline DNA sequencing of environmental samples using a hand-held nanopore sequencer
in a remote field location: the McMurdo Dry Valleys, Antarctica. Sequencing was performed …

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

J Quick, P Ashton, S Calus, C Chatt, S Gossain… - Genome biology, 2015 - Springer
Nanopore sequencing results In order to evaluate the potential benefits of real-time sequencing
… read sets as they would have become available in real time, that is, at 10 min intervals …

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices

ND Sanderson, TL Street, D Foster, J Swann, BL Atkins… - BMC genomics, 2018 - Springer
Nanopore sequencing offers advantages in speed of detection over MiSeq. Here, we report
a real-time analytical pathway for Nanopore sequence … for any microbial sequencing, and …

Field-based species identification of closely-related plants using real-time nanopore sequencing

J Parker, AJ Helmstetter, D Devey, T Wilkinson… - Scientific reports, 2017 - nature.com
… Recently, portable, real-time, nanopore sequencing (RTnS) has … Samples were collected
and sequenced in a single day by RTnS … Field-based RTnS makes real-time, rapid specimen …

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

S Kovaka, Y Fan, B Ni, W Timp, MC Schatz - Nature biotechnology, 2021 - nature.com
nanopore sequencing could otherwise identify 3,9 . Enrichment methods specifically designed
for nanopore sequencing… reagents and extra preparation time 10 . These approaches are …

[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities

L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
… Since its introduction, nanopore sequencing has enhanced our ability to study complex
microbial samples through the possibility to sequence long reads in real time using inexpensive …

Solid-state and biological nanopore for real-time sensing of single chemical and sequencing of DNA

F Haque, J Li, HC Wu, XJ Liang, P Guo - Nano today, 2013 - Elsevier
… the DNA strand and a nanopore which discriminates different … yet on direct
exonuclease-nanopore sequencing and it still … fed into the nanopore for sequencing is in the …

Scaffolding and completing genome assemblies in real-time with nanopore sequencing

MD Cao, SH Nguyen, D Ganesamoorthy… - Nature …, 2017 - nature.com
… We ran npScarf in real-time mode, in which nanopore sequencing data are streamed to the
pipeline in the exact order they were generated. This allowed us to assess the completeness …