GoWeb: a semantic search engine for the life science web

H Dietze, M Schroeder - BMC bioinformatics, 2009 - Springer
Background Current search engines are keyword-based. Semantic technologies promise a
next generation of semantic search engines, which will be able to answer questions. Current …

G-Bean: an ontology-graph based web tool for biomedical literature retrieval

JZ Wang, Y Zhang, L Dong, L Li, PK Srimani, PS Yu - BMC bioinformatics, 2014 - Springer
Background Currently, most people use NCBI's PubMed to search the MEDLINE database,
an important bibliographical information source for life science and biomedical information …

Information retrieval and knowledge discovery utilising a biomedical Semantic Web

S Mukherjea - Briefings in bioinformatics, 2005 - academic.oup.com
Although various ontologies and knowledge sources have been developed in recent years
to facilitate biomedical research, it is difficult to assimilate information from multiple …

Evaluation of research in biomedical ontologies

R Hoehndorf, M Dumontier… - Briefings in …, 2013 - academic.oup.com
Ontologies are now pervasive in biomedicine, where they serve as a means to standardize
terminology, to enable access to domain knowledge, to verify data consistency and to …

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

PL Whetzel, NF Noy, NH Shah… - Nucleic acids …, 2011 - academic.oup.com
Abstract The National Center for Biomedical Ontology (NCBO) is one of the National Centers
for Biomedical Computing funded under the NIH Roadmap Initiative. Contributing to the …

[PDF][PDF] Ontology-driven metadata enrichment for genomic datasets

A Bernasconi, A Canakoglu, S Ceri - 2018 - swat4hcls.figshare.com
Data-driven genomic research requires accessing several repositories of genomic datasets,
produced by international consortia, which provide open access to extremely valuable and …

Ontology based metadata management in medical domains

Q Chong, A Marwadi, K Supekar… - Journal of Research and …, 2003 - search.informit.org
In medical research, one of major challenges is to archive, access, and analyse various
heterogeneous databases containing patient information gathered from a large volume of …

ontologyX: a suite of R packages for working with ontological data

D Greene, S Richardson, E Turro - Bioinformatics, 2017 - academic.oup.com
Ontologies are widely used constructs for encoding and analyzing biomedical data, but the
absence of simple and consistent tools has made exploratory and systematic analysis of …

Where to publish and find ontologies? A survey of ontology libraries

M d'Aquin, NF Noy - Journal of Web Semantics, 2012 - Elsevier
One of the key promises of the Semantic Web is its potential to enable and facilitate data
interoperability. The ability of data providers and application developers to share and reuse …

Exploring large document repositories with RDF technology: The DOPE project

H Stuckenschmidt, F Van Harmelen… - IEEE Intelligent …, 2004 - ieeexplore.ieee.org
This thesaurus-based search system uses automatic indexing, RDF-based querying, and
concept-based visualization of results to support exploration of large online document …