[HTML][HTML] A framework for using reference ontologies as a foundation for the semantic web

JF Brinkley, D Suciu, LT Detwiler… - AMIA Annual …, 2006 - ncbi.nlm.nih.gov
The semantic web is envisioned as an evolving set of local ontologies that are gradually
linked together into a global knowledge network. Many such local “application” ontologies …

DOORS to the semantic web and grid with a PORTAL for biomedical computing

C Taswell - IEEE Transactions on Information Technology in …, 2008 - ieeexplore.ieee.org
The semantic web remains in the early stages of development. It has not yet achieved the
goals envisioned by its founders as a pervasive web of distributed knowledge and …

OntoCAT--simple ontology search and integration in Java, R and REST/JavaScript

T Adamusiak, T Burdett, N Kurbatova… - BMC …, 2011 - Springer
Background Ontologies have become an essential asset in the bioinformatics toolbox and a
number of ontology access resources are now available, for example, the EBI Ontology …

Graph-based concept weighting for medical information retrieval

B Koopman, G Zuccon, P Bruza, L Sitbon… - Proceedings of the …, 2012 - dl.acm.org
This paper presents a graph-based method to weight medical concepts in documents for the
purposes of information retrieval. Medical concepts are extracted from free-text documents …

[PDF][PDF] Ontology Summit 2007-Ontology, taxonomy, folksonomy: Understanding the distinctions

M Gruninger, O Bodenreider, F Olken, L Obrst… - Applied …, 2008 - academia.edu
Under the appellation of “ontology” are found many different types of artifacts created and
used in different communities to represent entities and their relationships for purposes …

Making biomedical ontologies and ontology repositories work

NF Noy, DL Rubin, MA Musen - IEEE Intelligent Systems, 2004 - ieeexplore.ieee.org
It is becoming impossible to contemplate successful bio-medical research without canonical
data structures. The biomedical computation community finds itself grappling with hundreds …

[HTML][HTML] Assessing the practice of biomedical ontology evaluation: Gaps and opportunities

M Amith, Z He, J Bian, JA Lossio-Ventura… - Journal of biomedical …, 2018 - Elsevier
With the proliferation of heterogeneous health care data in the last three decades,
biomedical ontologies and controlled biomedical terminologies play a more and more …

Knowledge representation and ontologies

KW Fung, O Bodenreider - Clinical research informatics, 2023 - Springer
The representation of medical data and knowledge is fundamental in the field of medical
informatics. Ontologies and related artifacts are important tools in knowledge representation …

Ontology-based MEDLINE document classification

F Camous, S Blott, AF Smeaton - International Conference on …, 2007 - Springer
An increasing and overwhelming amount of biomedical information is available in the
research literature mainly in the form of free-text. Biologists need tools that automate their …

Semantically linking and browsing PubMed abstracts with gene ontology

BC Vanteru, JS Shaik, M Yeasin - BMC genomics, 2008 - Springer
Background The technological advances in the past decade have lead to massive progress
in the field of biotechnology. The documentation of the progress made exists in the form of …