Information retrieval and knowledge discovery utilizing a biomedical patent semantic web

S Mukherjea, B Bamba, P Kankar - IEEE transactions on …, 2005 - ieeexplore.ieee.org
Before undertaking new biomedical research, identifying concepts that have already been
patented is essential. A traditional keyword-based search on patent databases may not be …

OBIB-a novel ontology for biobanking

M Brochhausen, J Zheng, D Birtwell, H Williams… - Journal of biomedical …, 2016 - Springer
Background Biobanking necessitates extensive integration of data to allow data analysis
and specimen sharing. Ontologies have been demonstrated to be a promising approach in …

BioPortal: ontologies and integrated data resources at the click of a mouse

NF Noy, NH Shah, PL Whetzel, B Dai… - Nucleic acids …, 2009 - academic.oup.com
Biomedical ontologies provide essential domain knowledge to drive data integration,
information retrieval, data annotation, natural-language processing and decision support …

AlzPharm: integration of neurodegeneration data using RDF

HYK Lam, L Marenco, T Clark, Y Gao, J Kinoshita… - BMC …, 2007 - Springer
Background Neuroscientists often need to access a wide range of data sets distributed over
the Internet. These data sets, however, are typically neither integrated nor interoperable …

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration

E Ong, Z Xiang, B Zhao, Y Liu, Y Lin… - Nucleic acids …, 2017 - academic.oup.com
Linked Data (LD) aims to achieve interconnected data by representing entities using Unified
Resource Identifiers (URIs), and sharing information using Resource Description …

PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm

MV Plikus, Z Zhang, CM Chuong - BMC bioinformatics, 2006 - Springer
Background Understanding research activity within any given biomedical field is important.
Search outputs generated by MEDLINE/PubMed are not well classified and require lengthy …

Improving life sciences information retrieval using semantic web technology

D Quan - Briefings in bioinformatics, 2007 - academic.oup.com
The ability to retrieve relevant information is at the heart of every aspect of research and
development in the life sciences industry. Information is often distributed across multiple …

The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience

WJ Bug, GA Ascoli, JS Grethe, A Gupta… - Neuroinformatics, 2008 - Springer
A critical component of the Neuroscience Information Framework (NIF) project is a
consistent, flexible terminology for describing and retrieving neuroscience-relevant …

The national cancer institute's thesaurus and ontology

J Golbeck, G Fragoso, F Hartel, J Hendler… - Journal of web …, 2003 - Elsevier
The NCI Thésaurus is a public domain description–logic-based terminology produced by the
National Cancer Institute, and distributed as a component of the NCI Center for …

Benchmarking ontologies: bigger or better?

L Yao, A Divoli, I Mayzus, JA Evans… - PLoS computational …, 2011 - journals.plos.org
A scientific ontology is a formal representation of knowledge within a domain, typically
including central concepts, their properties, and relations. With the rise of computers and …