Taurine-containing uridine modifications in tRNA anticodons are required to decipher non-universal genetic codes in ascidian mitochondria

T Suzuki, K Miyauchi, T Suzuki, S Yokobori… - Journal of Biological …, 2011 - ASBMB
Variations in the genetic code are found frequently in mitochondrial decoding systems. Four
non-universal genetic codes are employed in ascidian mitochondria: AUA for Met, UGA for …

Decoding mechanism of non-universal genetic codes in Loligo bleekeri mitochondria

T Ohira, T Suzuki, K Miyauchi, T Suzuki… - Journal of Biological …, 2013 - ASBMB
Non-universal genetic codes are frequently found in animal mitochondrial decoding
systems. In squid mitochondria, four codons deviate from the universal genetic code, namely …

Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria

A Nagao, M Ohara, K Miyauchi, S Yokobori… - Nature Structural & …, 2017 - nature.com
The genetic code is not frozen but still evolving, which can result in the acquisition
of'dialectal'codons that deviate from the universal genetic code. RNA modifications in the …

tRNA modification and genetic code variations in animal mitochondria

K Watanabe, S Yokobori - Journal of nucleic acids, 2011 - Wiley Online Library
In animal mitochondria, six codons have been known as nonuniversal genetic codes, which
vary in the course of animal evolution. They are UGA (termination codon in the universal …

An extra tRNA Gly (U * CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine

A Kondow, T Suzuki, S Yokobori, T Ueda… - Nucleic acids …, 1999 - academic.oup.com
Amino acid assignments of metazoan mitochondrial codons AGA/AGG are known to vary
among animal species; arginine in Cnidaria, serine in invertebrates and stop in vertebrates …

The presence of pseudouridine in the anticodon alters the genetic code: a possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm …

K Tomita, T Ueda, K Watanabe - Nucleic acids research, 1999 - academic.oup.com
It has been inferred from DNA sequence analyses that in echinoderm mitochondria not only
the usual asparagine codons AAU and AAC, but also the usual lysine codon AAA, are …

5-formylcytidine (f5C) found at the wobble position of the anticodon of squid mitochondrial tRNA (Met) CAU.

K Tomita, T Ueda, K Watanabe - Nucleic acids symposium series, 1997 - europepmc.org
In squid (Loligo breekeri) mitochondria, AUA codons are translated as methionine instead of
the universal isoleucine. Here, we present the nucleotide sequence of squid mitochondrial …

7-Methylguanosine at the anticodon wobble position of squid mitochondrial tRNASerGCU: molecular basis for assignment of AGA/AGG codons as serine in …

K Tomita, T Ueda, K Watanabe - … et Biophysica Acta (BBA)-Gene Structure …, 1998 - Elsevier
In mitochondria of the squid, Loligo bleekeri, both the AGA and AGG codons are considered
to correspond to serine instead of arginine as in the universal genetic code, and its genome …

A novel wobble rule found in starfish mitochondria: presence of 7-methylguanosine at the anticodon wobble position expands decoding capability of tRNA

S Matsuyama, T Ueda, PF Crain, JA McCloskey… - Journal of Biological …, 1998 - ASBMB
In the starfish mitochondrial (mt) genome, codons AGA and AGG (in addition to AGU and
AGC) have been considered to be translated as serine. There is, however, only a single …

Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes

X Xia - Gene, 2005 - Elsevier
The H-strand of vertebrate mitochondrial DNA is left single-stranded for hours during the
slow DNA replication. This facilitates C→ U mutations on the H-strand (and consequently …