BayReL: Bayesian relational learning for multi-omics data integration

E Hajiramezanali, A Hasanzadeh… - Advances in …, 2020 - proceedings.neurips.cc
High-throughput molecular profiling technologies have produced high-dimensional multi-
omics data, enabling systematic understanding of living systems at the genome scale …

Tensor graph convolutional networks for multi-relational and robust learning

VN Ioannidis, AG Marques… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
The era of “data deluge” has sparked renewed interest in graph-based learning methods
and their widespread applications ranging from sociology and biology to transportation and …

SINr: fast computing of sparse interpretable node representations is not a sin!

T Prouteau, V Connes, N Dugué, A Perez… - … on Intelligent Data …, 2021 - Springer
While graph embedding aims at learning low-dimensional representations of nodes
encompassing the graph topology, word embedding focus on learning word vectors that …

Classification in biological networks with hypergraphlet kernels

J Lugo-Martinez, D Zeiberg, T Gaudelet… - …, 2021 - academic.oup.com
Motivation Biological and cellular systems are often modeled as graphs in which vertices
represent objects of interest (genes, proteins and drugs) and edges represent relational ties …

Hybrid micro/macro level convolution for heterogeneous graph learning

L Yu, L Sun, B Du, C Liu, W Lv, H Xiong - arXiv preprint arXiv:2012.14722, 2020 - arxiv.org
Heterogeneous graphs are pervasive in practical scenarios, where each graph consists of
multiple types of nodes and edges. Representation learning on heterogeneous graphs aims …

Unsupervised graph-level representation learning with hierarchical contrasts

W Ju, Y Gu, X Luo, Y Wang, H Yuan, H Zhong… - Neural Networks, 2023 - Elsevier
Unsupervised graph-level representation learning has recently shown great potential in a
variety of domains, ranging from bioinformatics to social networks. Plenty of graph …

Signal processing on simplicial complexes with vertex signals

F Ji, G Kahn, WP Tay - IEEE Access, 2022 - ieeexplore.ieee.org
In classical graph signal processing (GSP), the underlying topological structures are
restricted in terms of dimensionality. A graph or a 1-complex is a combinatorial object that …

[PDF][PDF] Structure-informed graph auto-encoder for relational inference and simulation

Y Li, C Meng, C Shahabi, Y Liu - ICML Workshop on Learning …, 2019 - liyaguang.github.io
A variety of real-world applications require the modeling and the simulation of dynamical
systems, eg, physics, transportation and climate. With the increase of complexity, it becomes …

Coupled graph ode for learning interacting system dynamics

Z Huang, Y Sun, W Wang - Proceedings of the 27th ACM SIGKDD …, 2021 - dl.acm.org
Many real-world systems such as social networks and moving planets are dynamic in
nature, where a set of coupled objects are connected via the interaction graph and exhibit …

Implicit SVD for graph representation learning

S Abu-El-Haija, H Mostafa, M Nassar… - Advances in …, 2021 - proceedings.neurips.cc
Recent improvements in the performance of state-of-the-art (SOTA) methods for Graph
Representational Learning (GRL) have come at the cost of significant computational …