Dense power-law networks and simplicial complexes

OT Courtney, G Bianconi - Physical Review E, 2018 - APS
There is increasing evidence that dense networks occur in on-line social networks,
recommendation networks and in the brain. In addition to being dense, these networks are …

Graph filtration learning

C Hofer, F Graf, B Rieck… - … on Machine Learning, 2020 - proceedings.mlr.press
We propose an approach to learning with graph-structured data in the problem domain of
graph classification. In particular, we present a novel type of readout operation to aggregate …

Hypergraph clustering by iteratively reweighted modularity maximization

T Kumar, S Vaidyanathan… - Applied Network …, 2020 - Springer
Learning on graphs is a subject of great interest due to the abundance of relational data
from real-world systems. Many of these systems involve higher-order interactions (super …

Building powerful and equivariant graph neural networks with structural message-passing

C Vignac, A Loukas, P Frossard - Advances in neural …, 2020 - proceedings.neurips.cc
Message-passing has proved to be an effective way to design graph neural networks, as it is
able to leverage both permutation equivariance and an inductive bias towards learning local …

Generalist equivariant transformer towards 3d molecular interaction learning

X Kong, W Huang, Y Liu - arXiv preprint arXiv:2306.01474, 2023 - arxiv.org
Many processes in biology and drug discovery involve various 3D interactions between
molecules, such as protein and protein, protein and small molecule, etc. Given that different …

Representation learning on biomolecular structures using equivariant graph attention

T Le, F Noe, DA Clevert - Learning on Graphs Conference, 2022 - proceedings.mlr.press
Learning and reasoning about 3D molecular structures with varying size is an emerging and
important challenge in machine learning and especially in the development of …

Learning graph representation by aggregating subgraphs via mutual information maximization

C Wang, Z Liu - arXiv preprint arXiv:2103.13125, 2021 - arxiv.org
In this paper, we introduce a self-supervised learning method to enhance the graph-level
representations with the help of a set of subgraphs. For this purpose, we propose a universal …

edge2vec: Representation learning using edge semantics for biomedical knowledge discovery

Z Gao, G Fu, C Ouyang, S Tsutsui, X Liu, J Yang… - BMC …, 2019 - Springer
Background Representation learning provides new and powerful graph analytical
approaches and tools for the highly valued data science challenge of mining knowledge …

Multiresolution graph transformers and wavelet positional encoding for learning long-range and hierarchical structures

NK Ngo, TS Hy, R Kondor - The Journal of Chemical Physics, 2023 - pubs.aip.org
Contemporary graph learning algorithms are not well-suited for large molecules since they
do not consider the hierarchical interactions among the atoms, which are essential to …

Datasets, tasks, and training methods for large-scale hypergraph learning

S Kim, D Lee, Y Kim, J Park, T Hwang… - Data Mining and …, 2023 - Springer
Relations among multiple entities are prevalent in many fields, and hypergraphs are widely
used to represent such group relations. Hence, machine learning on hypergraphs has …