Multiscale modeling at the interface of molecular mechanics and natural language through attention neural networks

MJ Buehler - Accounts of Chemical Research, 2022 - ACS Publications
Conspectus Humans are continually bombarded with massive amounts of data. To deal with
this influx of information, we use the concept of attention in order to perceive the most …

MeLM, a generative pretrained language modeling framework that solves forward and inverse mechanics problems

MJ Buehler - Journal of the Mechanics and Physics of Solids, 2023 - Elsevier
We report a flexible multi-modal mechanics language model, MeLM, applied to solve
various nonlinear forward and inverse problems, that can deal with a set of instructions …

[HTML][HTML] Deep language models for interpretative and predictive materials science

Y Hu, MJ Buehler - APL Machine Learning, 2023 - pubs.aip.org
Machine learning (ML) has emerged as an indispensable methodology to describe,
discover, and predict complex physical phenomena that efficiently help us learn underlying …

[HTML][HTML] Generative pretrained autoregressive transformer graph neural network applied to the analysis and discovery of novel proteins

MJ Buehler - Journal of Applied Physics, 2023 - pubs.aip.org
We report a flexible language-model-based deep learning strategy, applied here to solve
complex forward and inverse problems in protein modeling, based on an attention neural …

Machine learning for multiscale modeling in computational molecular design

AS Alshehri, F You - Current Opinion in Chemical Engineering, 2022 - Elsevier
The chemical industry is facing ever-increasing challenges for developing novel products
and processes capable of reducing environmental impacts and curbing resource depletion …

Bidirectional generation of structure and properties through a single molecular foundation model

J Chang, JC Ye - Nature Communications, 2024 - nature.com
Recent successes of foundation models in artificial intelligence have prompted the
emergence of large-scale chemical pre-trained models. Despite the growing interest in large …

Sampling thermodynamic ensembles of molecular systems with generative neural networks: Will integrating physics-based models close the generalization gap?

GM Rotskoff - Current Opinion in Solid State and Materials Science, 2024 - Elsevier
If the promise of generative modeling techniques is realized, it may fundamentally change
how we carry out molecular simulation. The suite of techniques and models collectively …

Hierarchical materials from high information content macromolecular building blocks: construction, dynamic interventions, and prediction

L Shao, J Ma, JL Prelesnik, Y Zhou, M Nguyen… - Chemical …, 2022 - ACS Publications
Hierarchical materials that exhibit order over multiple length scales are ubiquitous in nature.
Because hierarchy gives rise to unique properties and functions, many have sought …

End-to-end differentiable construction of molecular mechanics force fields

Y Wang, J Fass, B Kaminow, JE Herr, D Rufa… - Chemical …, 2022 - pubs.rsc.org
Molecular mechanics (MM) potentials have long been a workhorse of computational
chemistry. Leveraging accuracy and speed, these functional forms find use in a wide variety …

Atomistic neural network representations for chemical dynamics simulations of molecular, condensed phase, and interfacial systems: efficiency, representability, and …

Y Zhang, Q Lin, B Jiang - Wiley Interdisciplinary Reviews …, 2023 - Wiley Online Library
Abstract Machine learning techniques have been widely applied in many fields of chemistry,
physics, biology, and materials science. One of the most fruitful applications is machine …