Exploring tissue architecture using spatial transcriptomics

A Rao, D Barkley, GS França, I Yanai - Nature, 2021 - nature.com
Deciphering the principles and mechanisms by which gene activity orchestrates complex
cellular arrangements in multicellular organisms has far-reaching implications for research …

Advances in spatial transcriptomic data analysis

R Dries, J Chen, N Del Rossi, MM Khan… - Genome …, 2021 - genome.cshlp.org
Spatial transcriptomics is a rapidly growing field that promises to comprehensively
characterize tissue organization and architecture at the single-cell or subcellular resolution …

Spatially resolved transcriptomics and beyond

N Crosetto, M Bienko, A Van Oudenaarden - Nature Reviews Genetics, 2015 - nature.com
Considerable progress in sequencing technologies makes it now possible to study the
genomic and transcriptomic landscape of single cells. However, to better understand the …

The emerging landscape of spatial profiling technologies

JR Moffitt, E Lundberg, H Heyn - Nature Reviews Genetics, 2022 - nature.com
Improved scale, multiplexing and resolution are establishing spatial nucleic acid and protein
profiling methods as a major pillar for cellular atlas building of complex samples, from …

The expanding vistas of spatial transcriptomics

L Tian, F Chen, EZ Macosko - Nature Biotechnology, 2023 - nature.com
The formation and maintenance of tissue integrity requires complex, coordinated activities
by thousands of genes and their encoded products. Until recently, transcript levels could …

Spatially resolved transcriptome profiling in model plant species

S Giacomello, F Salmén, BK Terebieniec, S Vickovic… - Nature plants, 2017 - nature.com
Understanding complex biological systems requires functional characterization of
specialized tissue domains. However, existing strategies for generating and analysing high …

[HTML][HTML] Spatial epigenome–transcriptome co-profiling of mammalian tissues

D Zhang, Y Deng, P Kukanja, E Agirre, M Bartosovic… - Nature, 2023 - nature.com
Emerging spatial technologies, including spatial transcriptomics and spatial epigenomics,
are becoming powerful tools for profiling of cellular states in the tissue context,,,–. However …

Museum of spatial transcriptomics

L Moses, L Pachter - Nature methods, 2022 - nature.com
The function of many biological systems, such as embryos, liver lobules, intestinal villi, and
tumors, depends on the spatial organization of their cells. In the past decade, high …

[HTML][HTML] Spatial transcriptomics coming of age

DJ Burgess - Nature Reviews Genetics, 2019 - nature.com
Spatial transcriptomics coming of age | Nature Reviews Genetics Skip to main content Thank
you for visiting nature.com. You are using a browser version with limited support for CSS. To …

Spatially resolved transcriptomics adds a new dimension to genomics

L Larsson, J Frisén, J Lundeberg - Nature methods, 2021 - nature.com
As single-cell omics continue to advance, the field of spatially resolved transcriptomics has
emerged with a set of experimental and computational methods to map out the positions of …