Chemprop: a machine learning package for chemical property prediction

E Heid, KP Greenman, Y Chung, SC Li… - Journal of Chemical …, 2023 - ACS Publications
Deep learning has become a powerful and frequently employed tool for the prediction of
molecular properties, thus creating a need for open-source and versatile software solutions …

Recent applications of machine learning in molecular property and chemical reaction outcome predictions

S Shilpa, G Kashyap, RB Sunoj - The Journal of Physical …, 2023 - ACS Publications
Burgeoning developments in machine learning (ML) and its rapidly growing adaptations in
chemistry are noteworthy. Motivated by the successful deployments of ML in the realm of …

Evaluating scalable uncertainty estimation methods for deep learning-based molecular property prediction

G Scalia, CA Grambow, B Pernici, YP Li… - Journal of chemical …, 2020 - ACS Publications
Advances in deep neural network (DNN)-based molecular property prediction have recently
led to the development of models of remarkable accuracy and generalization ability, with …

Using rule-based labels for weak supervised learning: a ChemNet for transferable chemical property prediction

GB Goh, C Siegel, A Vishnu, N Hodas - Proceedings of the 24th ACM …, 2018 - dl.acm.org
With access to large datasets, deep neural networks (DNN) have achieved human-level
accuracy in image and speech recognition tasks. However, in chemistry data is inherently …

Graseq: graph and sequence fusion learning for molecular property prediction

Z Guo, W Yu, C Zhang, M Jiang… - Proceedings of the 29th …, 2020 - dl.acm.org
With the recent advancement of deep learning, molecular representation learning--
automating the discovery of feature representation of molecular structure, has attracted …

Learning to make chemical predictions: the interplay of feature representation, data, and machine learning methods

M Haghighatlari, J Li, F Heidar-Zadeh, Y Liu, X Guan… - Chem, 2020 - cell.com
Recently, supervised machine learning has been ascending in providing new predictive
approaches for chemical, biological, and materials sciences applications. In this …

Smiles2vec: An interpretable general-purpose deep neural network for predicting chemical properties

GB Goh, NO Hodas, C Siegel, A Vishnu - arXiv preprint arXiv:1712.02034, 2017 - arxiv.org
Chemical databases store information in text representations, and the SMILES format is a
universal standard used in many cheminformatics software. Encoded in each SMILES string …

Transferable multilevel attention neural network for accurate prediction of quantum chemistry properties via multitask learning

Z Liu, L Lin, Q Jia, Z Cheng, Y Jiang… - Journal of chemical …, 2021 - ACS Publications
The development of efficient models for predicting specific properties through machine
learning is of great importance for the innovation of chemistry and material science …

A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility

B Tang, ST Kramer, M Fang, Y Qiu, Z Wu… - Journal of …, 2020 - Springer
Efficient and accurate prediction of molecular properties, such as lipophilicity and solubility,
is highly desirable for rational compound design in chemical and pharmaceutical industries …

DeepDelta: predicting ADMET improvements of molecular derivatives with deep learning

Z Fralish, A Chen, P Skaluba, D Reker - Journal of Cheminformatics, 2023 - Springer
Established molecular machine learning models process individual molecules as inputs to
predict their biological, chemical, or physical properties. However, such algorithms require …