Commonalities across computational workflows for uncovering explanatory variants in undiagnosed cases

SN Kobren, D Baldridge, M Velinder, JB Krier… - Genetics in …, 2021 - nature.com
Purpose Genomic sequencing has become an increasingly powerful and relevant tool to be
leveraged for the discovery of genetic aberrations underlying rare, Mendelian conditions …

MutationDistiller: user-driven identification of pathogenic DNA variants

D Hombach, M Schuelke, E Knierim… - Nucleic acids …, 2019 - academic.oup.com
MutationDistiller is a freely available online tool for user-driven analyses of Whole Exome
Sequencing data. It offers a user-friendly interface aimed at clinicians and researchers, who …

[HTML][HTML] An integrated approach for analyzing clinical genomic variant data from next-generation sequencing

EL Crowgey, DL Stabley, C Chen… - Journal of …, 2015 - ncbi.nlm.nih.gov
Next-generation sequencing (NGS) technologies provide the potential for developing high-
throughput and low-cost platforms for clinical diagnostics. A limiting factor to clinical …

COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System

S Jho, BC Kim, H Ghang, JH Kim, D Park, HM Kim… - BMC genomics, 2009 - Springer
Background A disease-causing mutation refers to a heritable genetic change that is
associated with a specific phenotype (disease). The detection of a mutation from a patient's …

The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic …

PD Stenson, M Mort, EV Ball, K Shaw, AD Phillips… - Human genetics, 2014 - Springer
Abstract The Human Gene Mutation Database (HGMD®) is a comprehensive collection of
germline mutations in nuclear genes that underlie, or are associated with, human inherited …

DaMold: A data‐mining platform for variant annotation and visualization in molecular diagnostics research

RV Pandey, S Pabinger, A Kriegner… - Human …, 2017 - Wiley Online Library
Next‐generation sequencing (NGS) has become a powerful and efficient tool for routine
mutation screening in clinical research. As each NGS test yields hundreds of variants, the …

Quantification of phenotype information aids the identification of novel disease genes

AT Vulto‐van Silfhout, C Gilissen, JJ Goeman… - Human …, 2017 - Wiley Online Library
Next‐generation sequencing led to the identification of many potential novel disease genes.
The presence of mutations in the same gene in multiple unrelated patients is, however, a …

Exploring the importance of case-level clinical information for variant interpretation

JS Berg - GEnEtics in mEdicinE, 2017 - nature.com
COMMENTARY to them? It is in data sharing that the ClinGen consortium is filling a critical
gap by facilitating variant adjudication through deposition of clinical assertions into the …

L ake L ouise Mutation Detection Meeting 2013: Clinical Translation of Next‐Generation Sequencing Requires Optimization of Workflows and Interpretation of Variants

A Smith, KM Boycott, O Jarinova - 2014 - Wiley Online Library
With the exponential reduction of the cost of next‐generation sequencing (NGS), it is no
longer the generation of data but the analysis and interpretation of massive amounts of …

isma: an R package for the integrative analysis of mutations detected by multiple pipelines

N Di Nanni, M Moscatelli, M Gnocchi, L Milanesi… - BMC …, 2019 - Springer
Background Recent comparative studies have brought to our attention how somatic mutation
detection from next-generation sequencing data is still an open issue in bioinformatics …