A power-based sliding window approach to evaluate the clinical impact of rare genetic variants in the nucleotide sequence or the spatial position of the folded protein

ET Cirulli, KMS Barrett, A Bolze, DP Judge… - Human Genetics and …, 2024 - cell.com
Systematic determination of novel variant pathogenicity remains a major challenge, even
when there is an established association between a gene and phenotype. Here we present …

A framework for automated gene selection in genomic applications

W Yu, K Machini, CA Austin-Tse, L Hao… - Genetics in …, 2021 - search.proquest.com
Purpose An efficient framework to identify disease-associated genes is needed to evaluate
genomic data for both individuals with an unknown disease etiology and those undergoing …

HPMV: human protein mutation viewer—relating sequence mutations to protein sequence architecture and function changes

WA Sherman, DB Kuchibhatla… - … of Bioinformatics and …, 2015 - World Scientific
Next-generation sequencing advances are rapidly expanding the number of human
mutations to be analyzed for causative roles in genetic disorders. Our Human Protein …

SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data

W Wang, W Hu, F Hou, P Hu, Z Wei - Journal of medical genetics, 2012 - jmg.bmj.com
Background Advances in next generation sequencing (NGS) technology have made it
possible to interrogate comprehensively genome-wide genetic variations. However, most …

Identification of medically actionable secondary findings in the 1000 genomes

E Olfson, CE Cottrell, NO Davidson, CA Gurnett… - PLOS …, 2015 - journals.plos.org
The American College of Medical Genetics and Genomics (ACMG) recommends that clinical
sequencing laboratories return secondary findings in 56 genes associated with medically …

Lessons Learned from Translating Genome Sequencing to Clinical Routine: Understanding the Accuracy of a Diagnostic Pipeline

J Park, M Sturm, O Seibel-Kelemen, S Ossowski… - Genes, 2024 - mdpi.com
The potential of genome sequencing (GS), which allows detection of almost all types of
genetic variation across nearly the entire genome of an individual, greatly expands the …

FamPipe: an automatic analysis pipeline for analyzing sequencing data in families for disease studies

RH Chung, WY Tsai, CY Kang, PJ Yao… - PLoS Computational …, 2016 - journals.plos.org
In disease studies, family-based designs have become an attractive approach to analyzing
next-generation sequencing (NGS) data for the identification of rare mutations enriched in …

VarElect: the phenotype-based variation prioritizer of the GeneCards Suite

G Stelzer, I Plaschkes, D Oz-Levi, A Alkelai, T Olender… - BMC genomics, 2016 - Springer
Background Next generation sequencing (NGS) provides a key technology for deciphering
the genetic underpinnings of human diseases. Typical NGS analyses of a patient depict tens …

Assessing the clinical utility of protein structural analysis in genomic variant classification: experiences from a diagnostic laboratory

RC Caswell, AC Gunning, MM Owens, S Ellard… - Genome Medicine, 2022 - Springer
Background The widespread clinical application of genome-wide sequencing has resulted
in many new diagnoses for rare genetic conditions, but testing regularly identifies variants of …

SVI: a simple single-nucleotide Human Variant Interpretation tool for Clinical Use

P Missier, E Wijaya, R Kirby, M Keogh - … on Data Integration in the Life …, 2015 - Springer
The rapid evolution of Next Generation Sequencing technology will soon make it possible to
test patients for genetic disorders at population scale. However, clinical interpretation of …