Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems

SS Yim, NI Johns, J Park, ALC Gomes… - Molecular Systems …, 2019 - embopress.org
Cell‐free expression systems enable rapid prototyping of genetic programs in vitro.
However, current throughput of cell‐free measurements is limited by the use of channel …

Expression optimization and synthetic gene networks in cell-free systems

DK Karig, S Iyer, ML Simpson… - Nucleic acids …, 2012 - academic.oup.com
Synthetic biology offers great promise to a variety of applications through the forward
engineering of biological function. Most efforts in this field have focused on employing living …

Precise and reliable gene expression via standard transcription and translation initiation elements

VK Mutalik, JC Guimaraes, G Cambray, C Lam… - Nature …, 2013 - nature.com
An inability to reliably predict quantitative behaviors for novel combinations of genetic
elements limits the rational engineering of biological systems. We developed an expression …

Cell-free gene expression: an expanded repertoire of applications

AD Silverman, AS Karim, MC Jewett - Nature Reviews Genetics, 2020 - nature.com
Cell-free biology is the activation of biological processes without the use of intact living cells.
It has been used for more than 50 years across the life sciences as a foundational research …

Using Synthetic Biological Parts and Microbioreactors to Explore the Protein Expression Characteristics of Escherichia coli

TE Gorochowski, E Van Den Berg… - ACS synthetic …, 2014 - ACS Publications
Synthetic biology has developed numerous parts for the precise control of protein
expression. However, relatively little is known about the burden these place on a host, or …

Metagenomic mining of regulatory elements enables programmable species-selective gene expression

NI Johns, ALC Gomes, SS Yim, A Yang… - Nature …, 2018 - nature.com
Robust and predictably performing synthetic circuits rely on the use of well-characterized
regulatory parts across different genetic backgrounds and environmental contexts. Here we …

Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology

J Chappell, K Jensen, PS Freemont - Nucleic acids research, 2013 - academic.oup.com
A bottleneck in our capacity to rationally and predictably engineer biological systems is the
limited number of well-characterized genetic elements from which to build. Current …

A comprehensive library of fluorescent transcriptional reporters for Escherichia coli

A Zaslaver, A Bren, M Ronen, S Itzkovitz, I Kikoin… - Nature …, 2006 - nature.com
E. coli is widely used for systems biology research; there exists a need, however, for tools
that can be used to accurately and comprehensively measure expression dynamics in …

A plasmid toolbox for controlled gene expression across the Proteobacteria

LA Schuster, CR Reisch - Nucleic Acids Research, 2021 - academic.oup.com
Controlled gene expression is fundamental for the study of gene function and our ability to
engineer bacteria. However, there is currently no easy-to-use genetics toolbox that enables …

Rapid acquisition and model-based analysis of cell-free transcription–translation reactions from nonmodel bacteria

SJ Moore, JT MacDonald, S Wienecke… - Proceedings of the …, 2018 - National Acad Sciences
Native cell-free transcription–translation systems offer a rapid route to characterize the
regulatory elements (promoters, transcription factors) for gene expression from nonmodel …