Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

D Senol Cali, JS Kim, S Ghose, C Alkan… - Briefings in …, 2019 - academic.oup.com
Nanopore sequencing technology has the potential to render other sequencing
technologies obsolete with its ability to generate long reads and provide portability …

The current state of nanopore sequencing

J Pugh - Nanopore sequencing: methods and protocols, 2023 - Springer
Nanopore sensing is a disruptive, revolutionary way in which to sequence nucleic acids,
including both native DNA and RNA molecules. First commercialized with the MinIONTM …

Nanopore DNA sequencing technologies and their applications towards single-molecule proteomics

A Dorey, S Howorka - Nature chemistry, 2024 - nature.com
Sequencing of nucleic acids with nanopores has emerged as a powerful tool offering rapid
readout, high accuracy, low cost and portability. This label-free method for sequencing at the …

The potential impact of nanopore sequencing on human genetics

MW Loose - Human Molecular Genetics, 2017 - academic.oup.com
Nanopore sequencing has been available to researchers for a little over 3 years. Recently,
the milestone of sequencing and assembling a human genome on this platform was …

[HTML][HTML] Accelerating SARS-CoV-2 genomic surveillance in a routine clinical setting with nanopore sequencing

S Buenestado-Serrano, M Herranz… - International Journal of …, 2024 - Elsevier
Background SARS-CoV-2 genomic analysis has been key to the provision of valuable data
to meet both epidemiological and clinical demands. High-throughput sequencing, generally …

[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities

L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
Since its introduction, nanopore sequencing has enhanced our ability to study complex
microbial samples through the possibility to sequence long reads in real time using …

Improved Nanopore full-length cDNA sequencing by PCR-suppression

A Bayega, S Oikonomopoulos, YC Wang… - Frontiers in …, 2022 - frontiersin.org
Full-length transcript sequencing remains a main goal of RNA sequencing. However, even
the application of long-read sequencing technologies such as Oxford Nanopore …

[HTML][HTML] Improvement of large copy number variant detection by whole genome nanopore sequencing

J Cuenca-Guardiola, B de la Morena-Barrio… - Journal of Advanced …, 2023 - Elsevier
Introduction Whole-genome sequencing using nanopore technologies can uncover
structural variants, which are DNA rearrangements larger than 50 base pairs. Nanopore …

Nanopore sequencing technology and Internet of living things: A big hope for U-healthcare

K Raza, S Qazi - Sensors for health monitoring, 2019 - Elsevier
The convergence of several technologies such as ultrafast nanopore sequencing,
biosensors, the Internet of things (IoT), cloud computing, computational intelligence …

Direct RNA nanopore sequencing of SARS-CoV-2 extracted from critical material from swabs

D Vacca, A Fiannaca, F Tramuto, V Cancila… - Life, 2022 - mdpi.com
In consideration of the increasing prevalence of COVID-19 cases in several countries and
the resulting demand for unbiased sequencing approaches, we performed a direct RNA …