Ontologies and text mining as a basis for a semantic web for the life sciences

A Doms, V Jakonienė, P Lambrix, M Schroeder… - … Summer School 2006 …, 2006 - Springer
The life sciences are a promising application area for semantic web technologies as there
are large online structured and unstructured data repositories and ontologies, which …

Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives

M Ashburner, U Leser… - Dagstuhl Seminar …, 2008 - research.aber.ac.uk
Researchers in Text Mining and researchers active in developing ontological resources
provide solutions to preserve semantic information properly, ie in ontologies and/or fact …

A system for ontology-based annotation of biomedical data

C Jonquet, MA Musen, N Shah - Data Integration in the Life Sciences: 5th …, 2008 - Springer
We present a system for ontology based annotation and indexing of biomedical data; the key
functionality of this system is to provide a service that enables users to locate biomedical …

[PDF][PDF] An Ontology-based Approach to Support Text Mining and Information Retrieval in the Biological Domain.

K Khelif, R Dieng-Kuntz, P Barbry - J. Univers. Comput. Sci., 2007 - academia.edu
This paper describes an ontology-based approach aiming at helping biologists to annotate
their documents and at facilitating their information retrieval task. Our approach, based on …

BioOntoVerb: A top level ontology based framework to populate biomedical ontologies from texts

JM Ruiz-Martínez, R Valencia-García… - Knowledge-Based …, 2012 - Elsevier
The Semantic Web can be conceived as an extension of the current Web where information
is given well-defined meaning. In this scenario ontologies are crucial since they provide …

Text mining and ontologies in biomedicine: making sense of raw text

I Spasic, S Ananiadou, J McNaught… - Briefings in …, 2005 - academic.oup.com
The volume of biomedical literature is increasing at such a rate that it is becoming difficult to
locate, retrieve and manage the reported information without text mining, which aims to …

[PDF][PDF] Towards ontologies on demand

Y Park, RJ Byrd, BK Boguraev - … of Workshop on …, 2003 - dominoweb.draco.res.ibm.com
Abstract The Semantic Web aims at adding semantic knowledge into the web of natural
language hypertext, enabling deep-level information search and information integration …

Identifying Gene Ontology Areas for Automated Enrichment

C Pesquita, T Grego, F Couto - … on Artificial Neural Networks, IWANN 2009 …, 2009 - Springer
Biomedical ontologies provide a commonly accepted scheme for the characterization of
biological concepts that enable knowledge sharing and integration. Updating and …

[PDF][PDF] Selecting an ontology for biomedical text mining

H Tan, P Lambrix - Proceedings of the BioNLP 2009 Workshop, 2009 - aclanthology.org
Text mining for biomedicine requires a significant amount of domain knowledge. Much of
this information is contained in biomedical ontologies. Developers of text mining …

[PDF][PDF] Future application of ontologies in e-Bioscience

M Roos, S Marshall, M Jansen, TM Breit - Position paper W3C Workshop …, 2004 - Citeseer
Ontologies can be used for rich annotation of data and the means to share and integrate
data. In addition to the annotation of experimental data for search-andretrieval in an e …