Built to last? Reproducibility and reusability of deep learning algorithms in computational pathology

SJ Wagner, C Matek, SS Boushehri, M Boxberg… - Modern Pathology, 2024 - Elsevier
Recent progress in computational pathology has been driven by deep learning. While code
and data availability are essential to reproduce findings from preceding publications …

Computational pathology in cancer diagnosis, prognosis, and prediction–present day and prospects

G Verghese, JK Lennerz, D Ruta, W Ng… - The Journal of …, 2023 - Wiley Online Library
Computational pathology refers to applying deep learning techniques and algorithms to
analyse and interpret histopathology images. Advances in artificial intelligence (AI) have led …

DeepMed: a unified, modular pipeline for end-to-end deep learning in computational pathology

M van Treeck, D Cifci, NG Laleh, OL Saldanha… - BioRxiv, 2021 - biorxiv.org
The interpretation of digitized histopathology images has been transformed thanks to
artificial intelligence (AI). End-to-end AI algorithms can infer high-level features directly from …

Make deep learning algorithms in computational pathology more reproducible and reusable

SJ Wagner, C Matek, S Shetab Boushehri… - Nature Medicine, 2022 - nature.com
Make deep learning algorithms in computational pathology more reproducible and reusable |
Nature Medicine Skip to main content Thank you for visiting nature.com. You are using a browser …

Deep learning models for digital pathology

A BenTaieb, G Hamarneh - arXiv preprint arXiv:1910.12329, 2019 - arxiv.org
Histopathology images; microscopy images of stained tissue biopsies contain fundamental
prognostic information that forms the foundation of pathological analysis and diagnostic …

Deep learning and its applications in computational pathology

R Hong, D Fenyö - BioMedInformatics, 2022 - mdpi.com
Deep learning techniques, such as convolutional neural networks (CNNs), generative
adversarial networks (GANs), and graph neural networks (GNNs) have, over the past …

Deep neural network models for computational histopathology: A survey

CL Srinidhi, O Ciga, AL Martel - Medical image analysis, 2021 - Elsevier
Histopathological images contain rich phenotypic information that can be used to monitor
underlying mechanisms contributing to disease progression and patient survival outcomes …

HEAL: an automated deep learning framework for cancer histopathology image analysis

Y Wang, N Coudray, Y Zhao, F Li, C Hu… - …, 2021 - academic.oup.com
Motivation Digital pathology supports analysis of histopathological images using deep
learning methods at a large-scale. However, applications of deep learning in this area have …

Next generation pathology: artificial intelligence enhances histopathology practice

B Acs, J Hartman - The Journal of Pathology, 2020 - Wiley Online Library
Deep learning algorithms have shown benefits for pathology in the context of risk
stratification of tumors. Although the results are promising, several steps have to be made to …

Deep learning in histopathology: the path to the clinic

J Van der Laak, G Litjens, F Ciompi - Nature medicine, 2021 - nature.com
Abstract Machine learning techniques have great potential to improve medical diagnostics,
offering ways to improve accuracy, reproducibility and speed, and to ease workloads for …