From base pair to bedside: molecular simulation and the translation of genomics to personalized medicine

DW Wright, S Wan, N Shublaq… - … Systems Biology and …, 2012 - Wiley Online Library
Despite the promises made that genomic sequencing would transform therapy by
introducing a new era of personalized medicine, relatively few tangible breakthroughs have …

A mechanistic pan-cancer pathway model informed by multi-omics data interprets stochastic cell fate responses to drugs and mitogens

M Bouhaddou, AM Barrette, AD Stern… - PLoS computational …, 2018 - journals.plos.org
Most cancer cells harbor multiple drivers whose epistasis and interactions with expression
context clouds drug and drug combination sensitivity prediction. We constructed a …

Accelerating the development of personalized cancer immunotherapy by integrating molecular patients' profiles with dynamic mathematical models

Z Agur, M Elishmereni, U Foryś… - Clinical Pharmacology & …, 2020 - Wiley Online Library
We review the evolution, achievements, and limitations of the current paradigm shift in
medicine, from the “one‐size‐fits‐all” model to “Precision Medicine.” Precision, or …

A multiscale cell‐based model of tumor growth for chemotherapy assessment and tumor‐targeted therapy through a 3D computational approach

S Jafari Nivlouei, M Soltani, E Shirani… - Cell …, 2022 - Wiley Online Library
Objectives Computational modeling of biological systems is a powerful tool to clarify diverse
processes contributing to cancer. The aim is to clarify the complex biochemical and …

A data-and model-driven approach for cancer treatment

S Schade, LA Ogilvie, T Kessler, M Schütte, C Wierling… - Der Onkologe, 2019 - Springer
All people are unique and so are their diseases. Our genomes, disease histories, behavior,
and lifestyles are all different; therefore it is not too surprising that people often respond …

[HTML][HTML] Preclinical cancer models and biomarkers for drug development: new technologies and emerging tools

M Dhandapani, A Goldman - Journal of molecular biomarkers & …, 2017 - ncbi.nlm.nih.gov
Background and purpose Predicting the efficacy of anticancer therapy is the holy grail of
drug development and treatment selection in the clinic. To achieve this goal, scientists …

[HTML][HTML] SMoRe ParS: A novel methodology for bridging modeling modalities and experimental data applied to 3D vascular tumor growth

HV Jain, KA Norton, BB Prado… - Frontiers in Molecular …, 2022 - frontiersin.org
Multiscale systems biology is having an increasingly powerful impact on our understanding
of the interconnected molecular, cellular, and microenvironmental drivers of tumor growth …

Functionalizing genomic data for personalization of medicine

CH Benes - Clinical Pharmacology & Therapeutics, 2013 - Wiley Online Library
The wealth of genomic information currently available to researchers and clinicians has
dramatically changed the way some diseases are defined. However, leveraging this …

[HTML][HTML] Systems biology of cancer: a challenging expedition for clinical and quantitative biologists

I Korsunsky, K McGovern, T LaGatta… - … in Bioengineering and …, 2014 - frontiersin.org
A systems-biology approach to complex disease (such as cancer) is now complementing
traditional experience-based approaches, which have typically been invasive and …

3D cancer models: One step closer to in vitro human studies

N Manduca, E Maccafeo, R De Maria, A Sistigu… - Frontiers in …, 2023 - frontiersin.org
Cancer immunotherapy is the great breakthrough in cancer treatment as it displayed
prolonged progression-free survival over conventional therapies, yet, to date, in only a …