Evaluation of fecal DNA extraction protocols for human gut microbiome studies

MY Lim, YS Park, JH Kim, YD Nam - BMC microbiology, 2020 - Springer
Background DNA extraction is an important factor influencing the microbiome profile in fecal
samples. Considering that the QIAamp DNA Stool Mini Kit, one of the most commonly used …

[HTML][HTML] A comparison of the efficiency of five different commercial DNA extraction kits for extraction of DNA from faecal samples

S Claassen, E du Toit, M Kaba, C Moodley… - Journal of …, 2013 - Elsevier
Differences in the composition of the gut microbiota have been associated with a range of
diseases using culture-independent methods. Reliable extraction of nucleic acid is a key …

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis

A Salonen, J Nikkilä, J Jalanka-Tuovinen… - Journal of …, 2010 - Elsevier
Several different protocols are used for fecal DNA extraction, which is an integral step in all
phylogenetic and metagenomic approaches to characterize the highly diverse intestinal …

[HTML][HTML] Comparison of DNA extraction methods for human gut microbial community profiling

MY Lim, EJ Song, SH Kim, J Lee, YD Nam - Systematic and applied …, 2018 - Elsevier
The human gut harbors a vast range of microbes that have significant impact on health and
disease. Therefore, gut microbiome profiling holds promise for use in early diagnosis and …

Microbial diversity in fecal samples depends on DNA extraction method: easyMag DNA extraction compared to QIAamp DNA stool mini kit extraction

H Mirsepasi, S Persson, C Struve, LOB Andersen… - BMC research …, 2014 - Springer
Background There are challenges, when extracting bacterial DNA from specimens for
molecular diagnostics, since fecal samples also contain DNA from human cells and many …

[PDF][PDF] Assessment of fecal DNA extraction protocols for metagenomic studies

F Yang, J Sun, H Luo, H Ren, H Zhou, Y Lin… - …, 2020 - academic.oup.com
Background Shotgun metagenomic sequencing has improved our understanding of the
human gut microbiota. Various DNA extraction methods have been compared to find …

Storage and handling of human faecal samples affect the gut microbiome composition: a feasibility study

AC Ezzy, AD Hagstrom, C George, AS Hamlin… - Journal of …, 2019 - Elsevier
Human gut microbiome analysis through faecal sampling typically involves five stages:
sample collection, storage, DNA extraction, next generation sequencing and bioinformatics …

Choice of DNA extraction method affects stool microbiome recovery and subsequent phenotypic association analyses

A Fernández-Pato, T Sinha, R Gacesa… - Scientific Reports, 2024 - nature.com
The lack of standardization in the methods of DNA extraction from fecal samples represents
the major source of experimental variation in the microbiome research field. In this study, we …

Comparison of DNA extraction methods for 16S rRNA gene sequencing in the analysis of the human gut microbiome

C Elie, M Perret, H Hage, E Sentausa, A Hesketh… - Scientific Reports, 2023 - nature.com
The gut microbiome is widely analyzed using high-throughput sequencing, such as 16S
rRNA gene amplicon sequencing and shotgun metagenomic sequencing (SMS). DNA …

Evaluation of QIAamp® DNA Stool Mini Kit for ecological studies of gut microbiota

M Li, J Gong, M Cottrill, H Yu, C de Lange… - Journal of …, 2003 - Elsevier
Cell lysis efficiency and the quality of DNA extracts from complex bacterial ecosystems are
two major concerns in molecular ecological studies of gut microbiota. In this study, we use …