Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes

X Xia - Gene, 2005 - Elsevier
The H-strand of vertebrate mitochondrial DNA is left single-stranded for hours during the
slow DNA replication. This facilitates C→ U mutations on the H-strand (and consequently …

Conflict between translation initiation and elongation in vertebrate mitochondrial genomes

X Xia, H Huang, M Carullo, E Betran, EN Moriyama - PLoS One, 2007 - journals.plos.org
The strand-biased mutation spectrum in vertebrate mitochondrial genomes results in an AC-
rich L-strand and a GT-rich H-strand. Because the L-strand is the sense strand of 12 protein …

tRNA modification and genetic code variations in animal mitochondria

K Watanabe, S Yokobori - Journal of nucleic acids, 2011 - Wiley Online Library
In animal mitochondria, six codons have been known as nonuniversal genetic codes, which
vary in the course of animal evolution. They are UGA (termination codon in the universal …

Evolution of the WANCY region in amniote mitochondrial DNA.

G Seutin, BF Lang, DP Mindell… - Molecular Biology and …, 1994 - academic.oup.com
In most vertebrate mitochondrial genomes, the site for initiation of light-strand replication,
OL, is found within a cluster of five transfer RNA (tRNA) genes (tRNA (Trp), tRNA (Ala), tRNA …

Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity

S Yokobori, T Suzuki, K Watanabe - Journal of molecular evolution, 2001 - Springer
Characteristic features of tRNA such as the anticodon sequence and modified nucleotides in
the anticodon loop are thought to be crucial effectors for promoting or restricting codon …

The role of selection in the evolution of human mitochondrial genomes

T Kivisild, P Shen, DP Wall, B Do, R Sung, K Davis… - Genetics, 2006 - academic.oup.com
High mutation rate in mammalian mitochondrial DNA generates a highly divergent pool of
alleles even within species that have dispersed and expanded in size recently. Phylogenetic …

Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes

S Asakawa, Y Kumazawa, T Araki, H Himeno… - Journal of molecular …, 1991 - Springer
The gene organization of starfish mitochondrial DNA is identical with that of the sea urchin
counterpart except for a reported inversion of an approximately 4.6-kb segment containing …

Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals.

JV Lopez, M Culver, JC Stephens… - Molecular biology …, 1997 - academic.oup.com
Differential rates of nucleotide substitution among different gene segments and between
distinct evolutionary lineages is well documented among mitochondrial genes and is likely a …

Sequence variation in the tRNA genes of human mitochondrial DNA

T Vilmi, JS Moilanen, S Finnilä, K Majamaa - Journal of molecular …, 2005 - Springer
Recent analyses have shown that nonsynonymous variation in human mitochondrial DNA
(mtDNA) contains nonneutral variants, suggesting the presence of mildly deleterious …

Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences

H Seligmann, NM Krishnan, BJ Rao - Journal of theoretical biology, 2006 - Elsevier
DNA replication in vertebrate mitochondria is usually directional, leaving different portions of
the genome single-stranded for different periods of time. During this time, mutations resulting …