[HTML][HTML] Semantic annotation in biomedicine: the current landscape

J Jovanović, E Bagheri - Journal of biomedical semantics, 2017 - Springer
The abundance and unstructured nature of biomedical texts, be it clinical or research
content, impose significant challenges for the effective and efficient use of information and …

[HTML][HTML] Open semantic annotation of scientific publications using DOMEO

P Ciccarese, M Ocana, T Clark - Journal of biomedical semantics, 2012 - Springer
Background Our group has developed a useful shared software framework for performing,
versioning, sharing and viewing Web annotations of a number of kinds, using an open …

Bio-yodie: A named entity linking system for biomedical text

G Gorrell, X Song, A Roberts - arXiv preprint arXiv:1811.04860, 2018 - arxiv.org
Ever-expanding volumes of biomedical text require automated semantic annotation
techniques to curate and put to best use. An established field of research seeks to link …

NCBO annotator: semantic annotation of biomedical data

C Jonquet, NH Shah, CH Youn, MA Musen… - ISWC 2009-8th …, 2009 - hal.science
The National Center for Biomedical Ontology Annotator is an ontology-based web service
for annotation of textual biomedical data with biomedical ontology concepts. The biomedical …

Cross-lingual semantic annotation of biomedical literature: experiments in Spanish and English

N Perez, P Accuosto, À Bravo, M Cuadros… - …, 2020 - academic.oup.com
Motivation Biomedical literature is one of the most relevant sources of information for
knowledge mining in the field of Bioinformatics. In spite of English being the most widely …

[HTML][HTML] An open annotation ontology for science on web 3.0

P Ciccarese, M Ocana, LJ Garcia Castro, S Das… - Journal of biomedical …, 2011 - Springer
Background There is currently a gap between the rich and expressive collection of
published biomedical ontologies, and the natural language expression of biomedical papers …

[HTML][HTML] MedTAG: a portable and customizable annotation tool for biomedical documents

F Giachelle, O Irrera, G Silvello - BMC Medical Informatics and Decision …, 2021 - Springer
Abstract Background Semantic annotators and Natural Language Processing (NLP)
methods for Named Entity Recognition and Linking (NER+ L) require plenty of training and …

[HTML][HTML] The open biomedical annotator

C Jonquet, NH Shah, MA Musen - Summit on translational …, 2009 - ncbi.nlm.nih.gov
The range of publicly available biomedical data is enormous and is expanding fast. This
expansion means that researchers now face a hurdle to extracting the data they need from …

[HTML][HTML] Constructing a semantic predication gold standard from the biomedical literature

H Kilicoglu, G Rosemblat, M Fiszman, TC Rindflesch - BMC bioinformatics, 2011 - Springer
Background Semantic relations increasingly underpin biomedical text mining and
knowledge discovery applications. The success of such practical applications crucially …

[HTML][HTML] SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes

A Tchechmedjiev, A Abdaoui, V Emonet, S Zevio… - BMC …, 2018 - Springer
Background Despite a wide adoption of English in science, a significant amount of
biomedical data are produced in other languages, such as French. Yet a majority of natural …