Drugrep-kg: Toward learning a unified latent space for drug repurposing using knowledge graphs

Z Ghorbanali, F Zare-Mirakabad, M Akbari… - Journal of Chemical …, 2023 - ACS Publications
Drug repurposing or repositioning (DR) refers to finding new therapeutic applications for
existing drugs. Current computational DR methods face data representation and negative …

[PDF][PDF] KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction.

X Lin, Z Quan, ZJ Wang, T Ma, X Zeng - IJCAI, 2020 - xuanlin1991.github.io
Drug-drug interaction (DDI) prediction is a challenging problem in pharmacology and
clinical application, and effectively identifying potential D-DIs during clinical trials is critical …

Explaining Drug Repositioning: A Case-Based Reasoning Graph Neural Network Approach

AG Cavazos - NeurIPS 2023 Workshop: New Frontiers in Graph … - openreview.net
Drug repositioning, the identification of novel uses of existing therapies, has become an
attractive strategy to accelerate drug development. Knowledge graphs (KGs) have emerged …

[HTML][HTML] Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses

C Moon, C Jin, X Dong, S Abrar, W Zheng… - Journal of biomedical …, 2021 - Elsevier
We aimed to develop and validate a new graph embedding algorithm for embedding drug-
disease-target networks to generate novel drug repurposing hypotheses. Our model …

A literature-based knowledge graph embedding method for identifying drug repurposing opportunities in rare diseases

DN Sosa, A Derry, M Guo, E Wei, C Brinton… - Pacific Symposium on …, 2019 - World Scientific
Millions of Americans are affected by rare diseases, many of which have poor survival rates.
However, the small market size of individual rare diseases, combined with the time and …

Learning a Patent-Informed Biomedical Knowledge Graph Reveals Technological Potential of Drug Repositioning Candidates

Y Jegal, J Choi, J Lee, KS Park, S Lee… - arXiv preprint arXiv …, 2023 - arxiv.org
Drug repositioning-a promising strategy for discovering new therapeutic uses for existing
drugs-has been increasingly explored in the computational science literature using …

Predicting Drug-Drug Interactions Using Knowledge Graphs

L Farrugia, LM Azzopardi, J Debattista… - arXiv preprint arXiv …, 2023 - arxiv.org
In the last decades, people have been consuming and combining more drugs than before,
increasing the number of Drug-Drug Interactions (DDIs). To predict unknown DDIs, recently …

Task-driven knowledge graph filtering improves prioritizing drugs for repurposing

F Ratajczak, M Joblin, M Ringsquandl… - BMC bioinformatics, 2022 - Springer
Background Drug repurposing aims at finding new targets for already developed drugs. It
becomes more relevant as the cost of discovering new drugs steadily increases. To find new …

Discovering DTI and DDI by knowledge graph with MHRW and improved neural network

S Zhang, X Lin, X Zhang - 2021 IEEE International Conference …, 2021 - ieeexplore.ieee.org
Drug discovery is of great significance in medical and biological research, while the study of
Drug-Target Interaction (DTI) and Drug-Drug Interaction (DDI) can help accelerate drug …

KG-Predict: A knowledge graph computational framework for drug repurposing

Z Gao, P Ding, R Xu - Journal of biomedical informatics, 2022 - Elsevier
The emergence of large-scale phenotypic, genetic, and other multi-model biochemical data
has offered unprecedented opportunities for drug discovery including drug repurposing …