networkGWAS: a network-based approach to discover genetic associations

G Muzio, L O'Bray, L Meng-Papaxanthos, J Klatt… - …, 2023 - academic.oup.com
Motivation While the search for associations between genetic markers and complex traits
has led to the discovery of tens of thousands of trait-related genetic variants, the vast …

networkGWAS: A network-based approach for genome-wide association studies in structured populations

G Muzio, L O'Bray, L Meng-Papaxanthos… - …, 2021 - research-collection.ethz.ch
While the search for associations between genetic markers and complex traits has
discovered tens of thousands of trait-related genetic variants, the vast majority of these only …

Efficiently identifying significant associations in genome-wide association studies

E Kostem, E Eskin - Journal of Computational Biology, 2013 - liebertpub.com
Over the past several years, genome-wide association studies (GWAS) have implicated
hundreds of genes in common disease. More recently, the GWAS approach has been …

A network-based approach to prioritize results from genome-wide association studies

N Akula, A Baranova, D Seto, J Solka, MA Nalls… - PloS one, 2011 - journals.plos.org
Genome-wide association studies (GWAS) are a valuable approach to understanding the
genetic basis of complex traits. One of the challenges of GWAS is the translation of genetic …

Integration of biological networks and pathways with genetic association studies

YV Sun - Human genetics, 2012 - Springer
Millions of genetic variants have been assessed for their effects on the trait of interest in
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …

A multi-trait evaluation of network propagation for GWAS results

B Bruncsics, P Antal - 2019 IEEE Conference on Computational …, 2019 - ieeexplore.ieee.org
High dimensional genetic data is widely used to explore simple relations between traits,
diseases and relevant genetic factors with high effect size, although identifying factors with …

Six degrees of epistasis: statistical network models for GWAS

BA McKinney, NM Pajewski - Frontiers in genetics, 2012 - frontiersin.org
There is growing evidence that much more of the genome than previously thought is
required to explain the heritability of complex phenotypes. Recent studies have …

Uncovering networks from genome-wide association studies via circular genomic permutation

CP Cabrera, P Navarro, JE Huffman… - G3: Genes …, 2012 - academic.oup.com
Genome-wide association studies (GWAS) aim to detect single nucleotide polymorphisms
(SNP) associated with trait variation. However, due to the large number of tests, standard …

Systems-level analysis of genome-wide association data

CR Farber - G3: Genes| Genomes| Genetics, 2013 - academic.oup.com
Genome-wide association studies (GWAS) have emerged as the method of choice for
identifying common variants affecting complex disease. In a GWAS, particular attention is …

[HTML][HTML] MetaPhat: detecting and decomposing multivariate associations from univariate genome-wide association statistics

J Lin, R Tabassum, S Ripatti, M Pirinen - Frontiers in Genetics, 2020 - frontiersin.org
Background Multivariate testing tools that integrate multiple genome-wide association
studies (GWAS) have become important as the number of phenotypes gathered from study …