Extensive deep neural networks for transferring small scale learning to large scale systems

K Mills, K Ryczko, I Luchak, A Domurad, C Beeler… - Chemical …, 2019 - pubs.rsc.org
We present a physically-motivated topology of a deep neural network that can efficiently
infer extensive parameters (such as energy, entropy, or number of particles) of arbitrarily …

Capturing molecular interactions in graph neural networks: a case study in multi-component phase equilibrium

S Qin, S Jiang, J Li, P Balaprakash, RC Van Lehn… - Digital …, 2023 - pubs.rsc.org
Graph neural networks (GNNs) have been widely used for predicting molecular properties,
especially for single molecules. However, when treating multi-component systems, GNNs …

Deep learning for complex chemical systems

W Li, G Wang, J Ma - National Science Review, 2023 - academic.oup.com
Deep learning for complex chemical systems | National Science Review | Oxford Academic
Skip to Main Content Advertisement Oxford Academic Journals Books Search Menu …

Inner and outer recursive neural networks for chemoinformatics applications

G Urban, N Subrahmanya, P Baldi - Journal of chemical …, 2018 - ACS Publications
Deep learning methods applied to problems in chemoinformatics often require the use of
recursive neural networks to handle data with graphical structure and variable size. We …

Sampling thermodynamic ensembles of molecular systems with generative neural networks: Will integrating physics-based models close the generalization gap?

GM Rotskoff - Current Opinion in Solid State and Materials Science, 2024 - Elsevier
If the promise of generative modeling techniques is realized, it may fundamentally change
how we carry out molecular simulation. The suite of techniques and models collectively …

Advances of machine learning in molecular modeling and simulation

M Haghighatlari, J Hachmann - Current Opinion in Chemical Engineering, 2019 - Elsevier
In this review, we highlight recent developments in the application of machine learning for
molecular modeling and simulation. After giving a brief overview of the foundations …

Scientific deep machine learning concepts for the prediction of concentration profiles and chemical reaction kinetics: Consideration of reaction conditions

N Adebar, J Keupp, VN Emenike… - The Journal of …, 2024 - ACS Publications
Emerging concepts from scientific deep machine learning such as physics-informed neural
networks (PINNs) enable a data-driven approach for the study of complex kinetic problems …

Metadynamics for training neural network model chemistries: A competitive assessment

JE Herr, K Yao, R McIntyre, DW Toth… - The Journal of chemical …, 2018 - pubs.aip.org
Neural network model chemistries (NNMCs) promise to facilitate the accurate exploration of
chemical space and simulation of large reactive systems. One important path to improving …

A dynamical biomolecular neural network

A Moorman, CC Samaniego, C Maley… - 2019 IEEE 58th …, 2019 - ieeexplore.ieee.org
While much of synthetic biology was founded on the creation of reusable, standardized
parts, there is now a growing interest in synthetic networks which can compute unique …

Convolutional neural nets in chemical engineering: Foundations, computations, and applications

S Jiang, VM Zavala - AIChE Journal, 2021 - Wiley Online Library
In this article, we review the mathematical foundations of convolutional neural nets (CNNs)
with the goals of:(i) highlighting connections with techniques from statistics, signal …