tRNA modification profiles and codon-decoding strategies in Methanocaldococcus jannaschii

N Yu, M Jora, B Solivio, P Thakur… - Journal of …, 2019 - Am Soc Microbiol
ABSTRACT tRNAs play a critical role in mRNA decoding, and posttranscriptional
modifications within tRNAs drive decoding efficiency and accuracy. The types and positions …

Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria)

CG Edmonds, PF Crain, R Gupta… - Journal of …, 1991 - Am Soc Microbiol
Nucleoside modification has been studied in unfractionated tRNA from 11 thermophilic
archaea (archaebacteria), including phylogenetically diverse representatives of thermophilic …

tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

C Marck, H Grosjean - Rna, 2002 - cambridge.org
From 50 genomes of the three domains of life (7 eukarya, 13 archaea, and 30 bacteria), we
extracted, analyzed, and compared over 4,000 sequences corresponding to cytoplasmic …

Biosynthesis and function of tRNA modifications in Archaea

G Phillips, V de Crécy-Lagard - Current opinion in microbiology, 2011 - Elsevier
tRNA modifications are important for decoding, translation accuracy, and structural integrity
of tRNAs. Archaeal tRNAs contain at least 47 different tRNA modifications, some of them …

Codon adaptation to tRNAs with Inosine modification at position 34 is widespread among Eukaryotes and present in two Bacterial phyla

À Rafels-Ybern, AG Torres, X Grau-Bove… - RNA biology, 2018 - Taylor & Francis
The modification of adenosine to inosine at position 34 of tRNA anticodons has a profound
impact upon codon-anticodon recognition. In bacteria, I34 is thought to exist only in …

Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea

P Wolff, C Villette, J Zumsteg, D Heintz, L Antoine… - Rna, 2020 - rnajournal.cshlp.org
To improve and complete our knowledge of archaeal tRNA modification patterns, we have
identified and compared the modification pattern (type and location) in tRNAs of three very …

Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [T opt], 23 C) and Stetteria hydrogenophila (T opt …

KR Noon, R Guymon, PF Crain… - Journal of …, 2003 - Am Soc Microbiol
We report the first study of tRNA modification in psychrotolerant archaea, specifically in the
archaeon Methanococcoides burtonii grown at 4 and 23° C. For comparison, unfractionated …

Two different mechanisms for tRNA ribose methylation in Archaea: a short survey

B Clouet-d'Orval, C Gaspin, A Mougin - Biochimie, 2005 - Elsevier
The biogenesis of tRNA involves multiple reactions including post-transcriptional
modifications and pre-tRNA splicing. Among the three domains of life, only Archaea have …

Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature …

BC d'Orval, ML Bortolin, C Gaspin… - Nucleic acids …, 2001 - academic.oup.com
Following a search of the Pyrococcus genomes for homologs of eukaryotic methylation
guide small nucleolar RNAs, we have experimentally identified in Pyrococcus abyssi four …

[HTML][HTML] A role for tRNA modifications in genome structure and codon usage

EM Novoa, M Pavon-Eternod, T Pan, LR de Pouplana - Cell, 2012 - cell.com
Transfer RNA (tRNA) gene content is a differentiating feature of genomes that contributes to
the efficiency of the translational apparatus, but the principles shaping tRNA gene copy …