Detection of viral pathogens with multiplex nanopore MinION sequencing: be careful with cross-talk
Metagenomic sequencing with the Oxford Nanopore MinION sequencer offers potential for
point-of-care testing of infectious diseases in clinical settings. To improve cost-effectiveness …
point-of-care testing of infectious diseases in clinical settings. To improve cost-effectiveness …
SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens
The COVID-19 pandemic forever underscored the need for bio-surveillance platforms
capable of rapidly detecting emerging pathogens. Oxford Nanopore Technology (ONT) …
capable of rapidly detecting emerging pathogens. Oxford Nanopore Technology (ONT) …
NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology
Background Next Generation Sequencing (NGS) techniques dominate today's landscape of
genetics and genomics research. Though Illumina still dominates worldwide sequencing …
genetics and genomics research. Though Illumina still dominates worldwide sequencing …
Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
A Benítez-Páez, KJ Portune, Y Sanz - Gigascience, 2016 - academic.oup.com
Background The miniaturised and portable DNA sequencer MinION™ has been released to
the scientific community within the framework of an early access programme to evaluate its …
the scientific community within the framework of an early access programme to evaluate its …
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial …
B Bogaerts, A Van den Bossche… - Journal of Clinical …, 2024 - Am Soc Microbiol
Whole-genome sequencing has become the method of choice for bacterial outbreak
investigation, with most clinical and public health laboratories currently routinely using short …
investigation, with most clinical and public health laboratories currently routinely using short …
ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants
Motivation Amplicon-based nanopore sequencing is increasingly used for molecular
surveillance during epidemics (eg ZIKA, EBOLA) or pandemics (eg SARS-CoV-2). However …
surveillance during epidemics (eg ZIKA, EBOLA) or pandemics (eg SARS-CoV-2). However …
Validation and application of long-read whole-genome sequencing for antimicrobial resistance gene detection and antimicrobial susceptibility testing
T Weinmaier, R Conzemius, Y Bergman… - Antimicrobial agents …, 2023 - Am Soc Microbiol
Next-generation sequencing applications are increasingly used for detection and
characterization of antimicrobial-resistant pathogens in clinical settings. Oxford Nanopore …
characterization of antimicrobial-resistant pathogens in clinical settings. Oxford Nanopore …
Ångström-and nano-scale pore-based nucleic acid sequencing of current and emergent pathogens
State-of-the-art nanopore sequencing enables rapid and real-time identification of novel
pathogens, which has wide application in various research areas and is an emerging …
pathogens, which has wide application in various research areas and is an emerging …
Streaming algorithms for identification pathogens and antibiotic resistance potential from real-time MinION™ sequencing
Abstract The recently introduced Oxford Nanopore MinION platform generates DNA
sequence data in real-time. This has great potential to shorten the sample-to-results time …
sequence data in real-time. This has great potential to shorten the sample-to-results time …
Next-generation sequencing of infectious pathogens
M Gwinn, D MacCannell, GL Armstrong - Jama, 2019 - jamanetwork.com
Next-generation sequencing holds potential for improving clinical and public health
microbiology. 1 In addition to identifying pathogens more rapidly and precisely than …
microbiology. 1 In addition to identifying pathogens more rapidly and precisely than …