[HTML][HTML] Modeling the expansion of virtual screening libraries

J Lyu, JJ Irwin, BK Shoichet - Nature chemical biology, 2023 - nature.com
Recently,'tangible'virtual libraries have made billions of molecules readily available.
Prioritizing these molecules for synthesis and testing demands computational approaches …

Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening

J Kuan, M Radaeva, A Avenido… - Wiley …, 2023 - Wiley Online Library
Recent efforts to synthetically expand drug‐like chemical libraries have led to the
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …

[HTML][HTML] Accelerating high-throughput virtual screening through molecular pool-based active learning

DE Graff, EI Shakhnovich, CW Coley - Chemical science, 2021 - pubs.rsc.org
Structure-based virtual screening is an important tool in early stage drug discovery that
scores the interactions between a target protein and candidate ligands. As virtual libraries …

Efficient and enhanced sampling of drug‐like chemical space for virtual screening and molecular design using modern machine learning methods

M Goel, R Aggarwal, B Sridharan… - Wiley …, 2023 - Wiley Online Library
Drug design involves the process of identifying and designing novel molecules that have
desirable properties and bind well to a given target receptor. Typically, such molecules are …

Virtual screening of chemical libraries

BK Shoichet - Nature, 2004 - nature.com
Virtual screening uses computer-based methods to discover new ligands on the basis of
biological structures. Although widely heralded in the 1970s and 1980s, the technique has …

Synthon-based ligand discovery in virtual libraries of over 11 billion compounds

AA Sadybekov, AV Sadybekov, Y Liu… - Nature, 2022 - nature.com
Abstract Structure-based virtual ligand screening is emerging as a key paradigm for early
drug discovery owing to the availability of high-resolution target structures,,–and ultra-large …

Virtual screening using protein− ligand docking: avoiding artificial enrichment

ML Verdonk, V Berdini, MJ Hartshorn… - Journal of chemical …, 2004 - ACS Publications
This study addresses a number of topical issues around the use of protein− ligand docking
in virtual screening. We show that, for the validation of such methods, it is key to use focused …

[HTML][HTML] Artificial intelligence–enabled virtual screening of ultra-large chemical libraries with deep docking

F Gentile, JC Yaacoub, J Gleave, M Fernandez… - Nature …, 2022 - nature.com
With the recent explosion of chemical libraries beyond a billion molecules, more efficient
virtual screening approaches are needed. The Deep Docking (DD) platform enables up to …

Structure-based virtual screening of chemical libraries for drug discovery

S Ghosh, A Nie, J An, Z Huang - Current opinion in chemical biology, 2006 - Elsevier
One of the main goals in drug discovery is to identify new chemical entities that have a high
likelihood of binding to the target protein to elicit the desired biological response. To this …

An open-source drug discovery platform enables ultra-large virtual screens

C Gorgulla, A Boeszoermenyi, ZF Wang, PD Fischer… - Nature, 2020 - nature.com
On average, an approved drug currently costs US $2–3 billion and takes more than 10 years
to develop. In part, this is due to expensive and time-consuming wet-laboratory experiments …