MinIONQC: fast and simple quality control for MinION sequencing data

R Lanfear, M Schalamun, D Kainer, W Wang… - …, 2019 - academic.oup.com
MinIONQC provides rapid diagnostic plots and quality control data from one or more
flowcells of sequencing data from Oxford Nanopore Technologies' MinION instrument. It can …

poRe: an R package for the visualization and analysis of nanopore sequencing data

M Watson, M Thomson, J Risse, R Talbot… - …, 2015 - academic.oup.com
Abstract Motivation: The Oxford Nanopore MinION device represents a unique sequencing
technology. As a mobile sequencing device powered by the USB port of a laptop, the …

NanoPack: visualizing and processing long-read sequencing data

W De Coster, S D'hert, DT Schultz, M Cruts… - …, 2018 - academic.oup.com
Here we describe NanoPack, a set of tools developed for visualization and processing of
long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences …

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files

A Payne, N Holmes, V Rakyan, M Loose - Bioinformatics, 2019 - academic.oup.com
Abstract Motivation The Oxford Nanopore Technologies (ONT) MinION is used for
sequencing a wide variety of sample types with diverse methods of sample extraction …

[PDF][PDF] pycoQC, interactive quality control for Oxford Nanopore Sequencing

A Leger, T Leonardi - Journal of Open Source Software, 2019 - joss.theoj.org
Nanopore sequencing of nucleic acids took nearly 30 years to develop and is now firmly
established as an alternative to sequencing by synthesis methods (Deamer, Akeson, & …

Nanocall: an open source basecaller for Oxford Nanopore sequencing data

M David, LJ Dursi, D Yao, PC Boutros… - …, 2017 - academic.oup.com
Abstract Motivation The highly portable Oxford Nanopore MinION sequencer has enabled
new applications of genome sequencing directly in the field. However, the MinION currently …

[HTML][HTML] MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9. 0 chemistry

M Jain, JR Tyson, M Loose, CLC Ip, DA Eccles… - …, 2017 - ncbi.nlm.nih.gov
Background: Long-read sequencing is rapidly evolving and reshaping the suite of
opportunities for genomic analysis. For the MinION in particular, as both the platform and …

[HTML][HTML] MinION Analysis and Reference Consortium: Phase 1 data release and analysis

CLC Ip, M Loose, JR Tyson, M de Cesare… - …, 2015 - ncbi.nlm.nih.gov
The advent of a miniaturized DNA sequencing device with a high-throughput contextual
sequencing capability embodies the next generation of large scale sequencing tools. The …

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles

RM Leggett, D Heavens, M Caccamo, MD Clark… - …, 2016 - academic.oup.com
Abstract Motivation: The Oxford Nanopore MinION sequencer, currently in pre-release
testing through the MinION Access Programme (MAP), promises long reads in real-time from …

NanoSim: nanopore sequence read simulator based on statistical characterization

C Yang, J Chu, RL Warren, I Birol - GigaScience, 2017 - academic.oup.com
Abstract Background The MinION sequencing instrument from Oxford Nanopore
Technologies (ONT) produces long read lengths from single-molecule sequencing–valuable …