[HTML][HTML] Practical considerations in virtual screening and molecular docking

M Berry, B Fielding, J Gamieldien - Emerging trends in …, 2015 - ncbi.nlm.nih.gov
Molecular docking has become an important common component of the drug discovery
toolbox, and its relative low-cost implications and perceived simplicity of use has stimulated …

Molecular docking for drug discovery and development: a widely used approach but far from perfect

G Wang, W Zhu - Future Medicinal Chemistry, 2016 - Taylor & Francis
It is usually the first step to find active compounds from existing chemicals for a drug
discovery and development project. Although many pharmaceutical companies have their …

Docking and virtual screening in drug discovery

M Kontoyianni - Proteomics for drug discovery: Methods and protocols, 2017 - Springer
Stages in a typical drug discovery organization include target selection, hit identification,
lead optimization, preclinical and clinical studies. Hit identification and lead optimization are …

Docking covalent targets for drug discovery: stimulating the computer-aided drug design community of possible pitfalls and erroneous practices

AQK Oyedele, AT Ogunlana, ID Boyenle… - Molecular Diversity, 2023 - Springer
The continuous approval of covalent drugs in recent years for the treatment of diseases has
led to an increased search for covalent agents by medicinal chemists and computational …

Relevance of molecular docking studies in drug designing

R Jakhar, M Dangi, A Khichi… - Current …, 2020 - ingentaconnect.com
Molecular Docking is used to positioning the computer-generated 3D structure of small
ligands into a receptor structure in a variety of orientations, conformations and positions …

Refinement and rescoring of virtual screening results

G Rastelli, L Pinzi - Frontiers in chemistry, 2019 - frontiersin.org
High-throughput docking is an established computational screening approach in drug
design. This methodology enables a rapid identification of biologically active hit compounds …

Outstanding challenges in protein–ligand docking and structure‐based virtual screening

B Waszkowycz, DE Clark… - Wiley Interdisciplinary …, 2011 - Wiley Online Library
With an ever‐increasing number of protein structures being solved by X‐ray crystallography,
the use of protein–ligand docking algorithms to assess candidate ligands for a binding site …

Use of molecular docking computational tools in drug discovery

F Stanzione, I Giangreco, JC Cole - Progress in medicinal chemistry, 2021 - Elsevier
Molecular docking has become an important component of the drug discovery process.
Since first being developed in the 1980s, advancements in the power of computer hardware …

Docking and scoring in virtual screening for drug discovery: methods and applications

DB Kitchen, H Decornez, JR Furr… - Nature reviews Drug …, 2004 - nature.com
Computational approaches that'dock'small molecules into the structures of macromolecular
targets and'score'their potential complementarity to binding sites are widely used in hit …

Towards the development of universal, fast and highly accurate docking/scoring methods: a long way to go

N Moitessier, P Englebienne, D Lee… - British journal of …, 2008 - Wiley Online Library
Accelerating the drug discovery process requires predictive computational protocols
capable of reducing or simplifying the synthetic and/or combinatorial challenge. Docking …