Nanopore sequencing of infectious fluid is a promising supplement for gold-standard culture in real-world clinical scenario

M Zhao, Y Zhang, L Chen, X Yan, T Xu, M Fu… - Frontiers in Cellular …, 2024 - frontiersin.org
Introduction Infectious diseases are major causes of morbidity and mortality worldwide,
necessitating the rapid identification and accurate diagnosis of pathogens. While unbiased …

Clinical performance of nanopore targeted sequencing for diagnosing infectious diseases

Y Fu, Q Chen, M Xiong, J Zhao, S Shen… - Microbiology …, 2022 - Am Soc Microbiol
The gold standard for confirming bacterial infections is culture-positive, which has a long
sample-to-result turnaround time and poor sensitivity for unculturable and fastidious …

Nanopore-targeted sequencing improves the diagnosis and treatment of patients with serious infections

Y Zhang, X Lu, LV Tang, L Xia, Y Hu - MBio, 2023 - Am Soc Microbiol
Serious infections are characterized by rapid progression, poor prognosis, and difficulty in
diagnosis. Recently, a new technique known as nanopore-targeted sequencing (NTS) was …

[HTML][HTML] Molecular rapid diagnostic testing for bloodstream infections: Nanopore targeted sequencing with pathogen-specific primers

D Han, F Yu, D Zhang, J Hu, X Zhang, D Xiang, B Lou… - Journal of Infection, 2024 - Elsevier
Background Nanopore sequencing, known for real-time analysis, shows promise for rapid
clinical infection diagnosis but lacks effective assays for bloodstream infections (BSIs) …

A dual-process of targeted and unbiased Nanopore sequencing enables accurate and rapid diagnosis of lower respiratory infections

Y Guo, Z Li, L Li, S Li, L Sun, X Yang, Y Dai, J Gu… - …, 2023 - thelancet.com
Background Nanopore metagenomics has been used for infectious disease diagnosis for
bacterial pathogens. However, this technology currently lacks comprehensive performance …

A new method using rapid Nanopore metagenomic cell-free DNA sequencing to diagnose bloodstream infections: a prospective observational study

ME Nielsen, KK Søgaard, SM Karst, AL Krarup… - medRxiv, 2024 - medrxiv.org
Abstract Background Bloodstream infections (BSIs) remain a major cause of mortality, in part
due to many patients developing sepsis or septic shock. To survive sepsis, it is paramount …

Nanopore-based metagenomic sequencing for the rapid and precise detection of pathogens among immunocompromised cancer patients with suspected infections

Q Deng, Y Cao, X Wan, B Wang, A Sun… - Frontiers in Cellular …, 2022 - frontiersin.org
Cancer patients are at high risk of infections and infection-related mortality; thereby, prompt
diagnosis and precise anti-infectives treatment are critical. This study aimed to evaluate the …

Third-generation sequencing in the clinical laboratory: exploring the advantages and challenges of nanopore sequencing

LM Petersen, IW Martin, WE Moschetti… - Journal of clinical …, 2019 - Am Soc Microbiol
Metagenomic sequencing for infectious disease diagnostics is an important tool that holds
promise for use in the clinical laboratory. Challenges for implementation so far include high …

Metagenomic diagnosis for a culture-negative sample from a patient with severe pneumonia by nanopore and next-generation sequencing

K Wang, P Li, Y Lin, H Chen, L Yang, J Li… - Frontiers in Cellular …, 2020 - frontiersin.org
Rapid and accurate etiologic diagnosis accelerates targeted antimicrobial therapy.
Metagenomic analysis has played a critical role in pathogen identification. In this study, we …

Sequencing, fast and slow: profiling microbiomes in human samples with nanopore sequencing

Y Park, J Lee, H Shim - Applied Biosciences, 2023 - mdpi.com
Rapid and accurate pathogen identification is crucial in effectively combating infectious
diseases. However, the current diagnostic tools for bacterial infections predominantly rely on …