Development of network analysis and visualization system for KEGG pathways

D Seo, MH Lee, SJ Yu - Symmetry, 2015 - mdpi.com
Big data refers to informationalization technology for extracting valuable information through
the use and analysis of large-scale data and, based on that data, deriving plans for …

Enrichment of metabolic routes through big data

A Viloria, M Torres, J Vargas, OB Pineda - Procedia Computer Science, 2020 - Elsevier
Abstract The Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway is a database
that contains a graphical representation of cellular processes. Cellular processes are basic …

Pathway network analysis of complex diseases based on multiple biological networks

F Zheng, L Wei, L Zhao, FC Ni - BioMed Research International, 2018 - Wiley Online Library
Biological pathways play important roles in the development of complex diseases, such as
cancers, which are multifactorial complex diseases that are usually caused by multiple …

MEGU: pathway mapping web-service based on KEGG and SVG

N Kono, K Arakawa, M Tomita - In silico biology, 2006 - content.iospress.com
Scientific visualization is a key technology to enhance our understanding of huge masses of
omics data, especially for cell-wide, high-throughput measurements of the physiological …

PyPathway: python package for biological network analysis and visualization

Y Xu, XC Luo - Journal of Computational Biology, 2018 - liebertpub.com
Life science studies represent one of the biggest generators of large data sets, mainly
because of rapid sequencing technological advances. Biological networks including …

BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathways

I Kim, S Choi, S Kim - BMC bioinformatics, 2018 - Springer
Background Bioinformatics research for finding biological mechanisms can be done by
analysis of transcriptome data with pathway based interpretation. Therefore, researchers …

Array2KEGG: Web-based tool of KEGG pathway analysis for gene expression profile

JS Kim, SJ Kim, HW Park, JP Youn, YR An, H Cho… - Biochip Journal, 2010 - Springer
Over the past decade, microarray experiments have become popular with a common
method of high-throughput omics technologies for understanding of gene expression …

A novel pathway network analytics method based on graph theory

S Saha, A Soliman, S Rajasekaran - Journal of Computational …, 2021 - liebertpub.com
A biological pathway is an ordered set of interactions between intracellular molecules
having collective activity that impacts cellular function, for example, by controlling metabolite …

KEGGSum: Summarizing genomic pathways

C David, H Kondylakis - Information, 2024 - mdpi.com
Over time, the renowned Kyoto Encyclopedia of Genes and Genomes (KEGG) has grown to
become one of the most comprehensive online databases for biological procedures. The …

Development of biological network crawling, clustering and visualization system

D Seo, Y Choi, MH Lee, SJ Yu - 2017 14th international …, 2017 - ieeexplore.ieee.org
With the development of software and devices for next generation sequencing, a vast
amount of bioinformatics data has been generated recently. Also, bioinformatics data based …