Comprehensive benchmarking reveals H2BK20 acetylation as a distinctive signature of cell-state-specific enhancers and promoters

V Kumar, NA Rayan, M Muratani, S Lim… - Genome …, 2016 - genome.cshlp.org
Although over 35 different histone acetylation marks have been described, the
overwhelming majority of regulatory genomics studies focus exclusively on H3K27ac and …

A unique H2B acetylation signature marks active enhancers and predicts their target genes

T Narita, Y Higashijima, S Kilic, T Liebner, J Walter… - bioRxiv, 2022 - biorxiv.org
Chromatin features are widely used for genome-scale mapping of enhancers. However,
discriminating active enhancers from other cis-regulatory elements, predicting enhancer …

Histone H3K27 acetylation is dispensable for enhancer activity in mouse embryonic stem cells

T Zhang, Z Zhang, Q Dong, J Xiong, B Zhu - Genome biology, 2020 - Springer
H3K27ac is well recognized as a marker for active enhancers and a great indicator of
enhancer activity. However, its functional impact on transcription has not been …

Acetylation of histone H2B marks active enhancers and predicts CBP/p300 target genes

T Narita, Y Higashijima, S Kilic, T Liebner, J Walter… - Nature Genetics, 2023 - nature.com
Chromatin features are widely used for genome-scale mapping of enhancers. However,
discriminating active enhancers from other cis-regulatory elements, predicting enhancer …

H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem …

K Karmodiya, AR Krebs, M Oulad-Abdelghani… - BMC genomics, 2012 - Springer
Background Transcription regulation in pluripotent embryonic stem (ES) cells is a complex
process that involves multitude of regulatory layers, one of which is post-translational …

Histone H4 lysine 20 acetylation is associated with gene repression in human cells

JY Kaimori, K Maehara, Y Hayashi-Takanaka… - Scientific reports, 2016 - nature.com
Histone acetylation is generally associated with gene activation and chromatin
decondensation. Recent mass spectrometry analysis has revealed that histone H4 lysine 20 …

Catching active enhancers via H2B N-terminal acetylation

C Huang, K Helin - Nature Genetics, 2023 - nature.com
Specific chromatin features, especially histone H3 lysine 27 acetylation, are widely used to
identify active enhancers, yet current methods are imprecise. New work suggests that …

H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction

GCA Taylor, R Eskeland, B Hekimoglu-Balkan… - Genome …, 2013 - genome.cshlp.org
Compared with histone H3, acetylation of H4 tails has not been well studied, especially in
mammalian cells. Yet, H4K16 acetylation is of particular interest because of its ability to …

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns

T Roh, G Wei, CM Farrell, K Zhao - Genome research, 2007 - genome.cshlp.org
Comparative genomic studies have been useful in identifying transcriptional regulatory
elements in higher eukaryotic genomes, but many important regulatory elements cannot be …

Genome-wide distribution of histone H4 Lysine 16 acetylation sites and their relationship to gene expression

N Horikoshi, P Kumar, GG Sharma, M Chen, CR Hunt… - Genome integrity, 2013 - Springer
Background Histone post-translational modifications are critical determinants of chromatin
structure and function, impacting multiple biological processes including DNA transcription …