PubMed and beyond: a survey of web tools for searching biomedical literature

Z Lu - Database, 2011 - academic.oup.com
The past decade has witnessed the modern advances of high-throughput technology and
rapid growth of research capacity in producing large-scale biological data, both of which …

[HTML][HTML] Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature

HM Müller, KM Van Auken, Y Li, PW Sternberg - BMC bioinformatics, 2018 - Springer
Background The biomedical literature continues to grow at a rapid pace, making the
challenge of knowledge retrieval and extraction ever greater. Tools that provide a means to …

[HTML][HTML] PubMed and beyond: biomedical literature search in the age of artificial intelligence

Q Jin, R Leaman, Z Lu - EBioMedicine, 2024 - thelancet.com
Biomedical research yields vast information, much of which is only accessible through the
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …

[HTML][HTML] BEST: next-generation biomedical entity search tool for knowledge discovery from biomedical literature

S Lee, D Kim, K Lee, J Choi, S Kim, M Jeon, S Lim… - PloS one, 2016 - journals.plos.org
As the volume of publications rapidly increases, searching for relevant information from the
literature becomes more challenging. To complement standard search engines such as …

Literature mining for the biologist: from information retrieval to biological discovery

LJ Jensen, J Saric, P Bork - Nature reviews genetics, 2006 - nature.com
For the average biologist, hands-on literature mining currently means a keyword search in
PubMed. However, methods for extracting biomedical facts from the scientific literature have …

Understanding PubMed® user search behavior through log analysis

R Islamaj Dogan, GC Murray, A Névéol, Z Lu - Database, 2009 - academic.oup.com
This article reports on a detailed investigation of PubMed users' needs and behavior as a
step toward improving biomedical information retrieval. PubMed is providing free service to …

Comparison of PubMed, Scopus, web of science, and Google scholar: strengths and weaknesses

ME Falagas, EI Pitsouni, GA Malietzis… - The FASEB …, 2008 - Wiley Online Library
The evolution of the electronic age has led to the development of numerous medical
databases on the World Wide Web, offering search facilities on a particular subject and the …

[HTML][HTML] Abstract Sifter: a comprehensive front-end system to PubMed

N Baker, T Knudsen, A Williams - F1000Research, 2017 - ncbi.nlm.nih.gov
Abstract The Abstract Sifter is a Microsoft Excel based application that enhances existing
search capabilities of PubMed. The Abstract Sifter assists researchers to search effectively …

pubmed. mineR: An R package with text-mining algorithms to analyse PubMed abstracts

J Rani, AR Shah, S Ramachandran - Journal of biosciences, 2015 - Springer
The PubMed literature database is a valuable source of information for scientific research. It
is rich in biomedical literature with more than 24 million citations. Data-mining of voluminous …

Searching for the right search—reaching the medical literature

R Steinbrook - New England Journal of Medicine, 2006 - Mass Medical Soc
Searching for the Right Search — Reaching the Medical Literature | New England Journal of
Medicine Skip to main content The New England Journal of Medicine homepage Advanced …