[PDF][PDF] Towards semantic annotation of bioinformatics services: building a controlled vocabulary

H Afzal, R Stevens, G Nenadic - Proc. of the Third International …, 2008 - researchgate.net
Most bio text-mining efforts so far have focused on identification of biological, molecular and
chemical entities from the literature to support knowledge acquisition and discovery in the …

[PDF][PDF] Towards a terminological resource for biomedical text mining.

G Nenadic, N Okazaki, S Ananiadou - LREC, 2006 - cs.brandeis.edu
One of the main challenges in biomedical text mining is the identification of terminology,
which is a key factor for accessing and integrating the information stored in literature …

[HTML][HTML] An analysis on the entity annotations in biological corpora

M Neves - F1000Research, 2014 - ncbi.nlm.nih.gov
Collection of documents annotated with semantic entities and relationships are crucial
resources to support development and evaluation of text mining solutions for the biomedical …

The BioLexicon: a large-scale terminological resource for biomedical text mining

P Thompson, J McNaught, S Montemagni… - BMC …, 2011 - Springer
Background Due to the rapidly expanding body of biomedical literature, biologists require
increasingly sophisticated and efficient systems to help them to search for relevant …

Mining semantic descriptions of bioinformatics web resources from the literature

H Afzal, R Stevens, G Nenadic - European Semantic Web Conference, 2009 - Springer
A number of projects (myGrid, BioMOBY, etc.) have recently been initiated in order to
organise emerging bioinformatics Web Services and provide their semantic descriptions …

Terminological resources for text mining over biomedical scientific literature

F Rinaldi, K Kaljurand, R Saetre - Artificial intelligence in medicine, 2011 - Elsevier
Objective We present a combined terminological resource for text mining over biomedical
literature. The purpose of the resource is to allow the detection of mentions of specific …

Mining semantic networks of bioinformatics e-resources from the literature

H Afzal, J Eales, R Stevens, G Nenadic - Journal of biomedical semantics, 2011 - Springer
Background There have been a number of recent efforts (eg BioCatalogue, BioMoby) to
systematically catalogue bioinformatics tools, services and datasets. These efforts rely on …

Semantic annotation in biomedicine: the current landscape

J Jovanović, E Bagheri - Journal of biomedical semantics, 2017 - Springer
The abundance and unstructured nature of biomedical texts, be it clinical or research
content, impose significant challenges for the effective and efficient use of information and …

BioTextQuest: a web-based biomedical text mining suite for concept discovery

N Papanikolaou, E Pafilis, S Nikolaou… - …, 2011 - academic.oup.com
BioTextQuest combines automated discovery of significant terms in article clusters with
structured knowledge annotation, via Named Entity Recognition services, offering interactive …

Text mining and ontologies in biomedicine: making sense of raw text

I Spasic, S Ananiadou, J McNaught… - Briefings in …, 2005 - academic.oup.com
The volume of biomedical literature is increasing at such a rate that it is becoming difficult to
locate, retrieve and manage the reported information without text mining, which aims to …