Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction
The identification of geometric relationships between protein structures offers a powerful
approach to predicting the structure and function of proteins. Methods to detect such …
approach to predicting the structure and function of proteins. Methods to detect such …
An alternative view of protein fold space
IN Shindyalov, PE Bourne - Proteins: Structure, Function, and …, 2000 - Wiley Online Library
Comparing and subsequently classifying protein structures information has received
significant attention concurrent with the increase in the number of experimentally derived 3 …
significant attention concurrent with the increase in the number of experimentally derived 3 …
Contemporary approaches to protein structure classification
In a similar manner to sequence database searching, it is also possible to compare three‐
dimensional protein structures. Such methods can be extremely useful because a structural …
dimensional protein structures. Such methods can be extremely useful because a structural …
Seeking significance in three-dimensional protein structure comparisons
K Mizuguchi, N Go - Current opinion in structural biology, 1995 - Elsevier
What is the significance of three-dimensional structural similarity? This fundamental
question still remains unanswered in spite of advances in automatic structure comparison …
question still remains unanswered in spite of advances in automatic structure comparison …
Automated discovery of structural signatures of protein fold and function
There are constraints on a protein sequence/structure for it to adopt a particular fold. These
constraints could be either a local signature involving particular sequences or arrangements …
constraints could be either a local signature involving particular sequences or arrangements …
Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins
Publisher Summary This chapter describes the application of computational geometry
methodology to protein-structure analysis and comparison. The Simplicial Neighborhood …
methodology to protein-structure analysis and comparison. The Simplicial Neighborhood …
On the universe of protein folds
R Kolodny, L Pereyaslavets… - Annual review of …, 2013 - annualreviews.org
In the fifty years since the first atomic structure of a protein was revealed, tens of thousands
of additional structures have been solved. Like all objects in biology, proteins structures …
of additional structures have been solved. Like all objects in biology, proteins structures …
A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary
We have determined consensus protein‐fold classifications on the basis of three
classification methods, SCOP, CATH, and Dali. These classifications make use of different …
classification methods, SCOP, CATH, and Dali. These classifications make use of different …
[图书][B] Protein geometry, classification, topology and symmetry: a computational analysis of structure
WR Taylor, A Aszódi - 2004 - taylorfrancis.com
From a geometric perspective, this book reviews and analyzes the structural principals of
proteins with the goal of revealing the underlying regularities in their construction. It also …
proteins with the goal of revealing the underlying regularities in their construction. It also …
[PDF][PDF] Decision support system for the evolutionary classification of protein structures.
The structures of nearly a thousand sequence-unique proteins represent only 300 different
3D shapes, ls structural resemblance between proteins with little sequence similarity the …
3D shapes, ls structural resemblance between proteins with little sequence similarity the …