Over the past decade, microarray experiments have become popular with a common
method of high-throughput omics technologies for understanding of gene expression …

While generation of high-throughput expression data is becoming routine, the fast, easy, and
systematic presentation and analysis of these data in a biological context is still an obstacle …

Abstract Motivation: The Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway
database is a very valuable information resource for researchers in the fields of life sciences …

KEGG pathway database is a collection of manually drawn pathway maps accompanied
with KGML format files intended for use in automatic analysis. KGML files, however, do not …

Background High-throughput technologies became common tools to decipher genome-wide
changes of gene expression (GE) patterns. Functional analysis of GE patterns is a daunting …

We developed PathAct, a novel method for pathway analysis to investigate the biological
and clinical implications of the gene expression profiles. The advantage of PathAct in …

With the development of high-throughput experimental techniques such as microarray, mass
spectrometry and large-scale mutagenesis, there is an increasing need to automatically …

Effective visualization is important for knowledge discovery when analysing expression
profile data. However, existing tools for visually integrating expression profile data with …

The KEGG PATHWAY database provides a widely used service for metabolic and
nonmetabolic pathways. It contains manually drawn pathway maps with information about …

Biological pathways are crucial to much of the scientific research today including the study of
specific biological processes related with human diseases. PathJam is a new …