NanoPipe—a web server for nanopore MinION sequencing data analysis

V Shabardina, T Kischka, F Manske… - …, 2019 - academic.oup.com
Background The fast-moving progress of the third-generation long-read sequencing
technologies will soon bring the biological and medical sciences to a new era of research …

poRe: an R package for the visualization and analysis of nanopore sequencing data

M Watson, M Thomson, J Risse, R Talbot… - …, 2015 - academic.oup.com
Abstract Motivation: The Oxford Nanopore MinION device represents a unique sequencing
technology. As a mobile sequencing device powered by the USB port of a laptop, the …

On-site MinION sequencing

LR Runtuwene, JSB Tuda, AE Mongan… - Single molecule and …, 2019 - Springer
DNA sequencing has reached an unprecedented level with the advent of Oxford Nanopore
Technologies' MinION. The low equipment investment, ease of library preparation, small …

Realtime analysis and visualization of MinION sequencing data with npReader

MD Cao, D Ganesamoorthy, MA Cooper… - …, 2016 - academic.oup.com
Abstract Motivation: The recently released Oxford Nanopore MinION sequencing platform
presents many innovative features opening up potential for a range of applications not …

MinIONQC: fast and simple quality control for MinION sequencing data

R Lanfear, M Schalamun, D Kainer, W Wang… - …, 2019 - academic.oup.com
MinIONQC provides rapid diagnostic plots and quality control data from one or more
flowcells of sequencing data from Oxford Nanopore Technologies' MinION instrument. It can …

Characterization of MinION nanopore data for resequencing analyses

A Magi, B Giusti, L Tattini - Briefings in bioinformatics, 2017 - academic.oup.com
Abstract The Oxford Nanopore Technologies MinION is a new device, based on nanopore
sequencing that is able to generate reads of tens of kilobases in length with faster …

Oxford Nanopore MinION sequencing and genome assembly

H Lu, F Giordano, Z Ning - Genomics, Proteomics and …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …

Nanocall: an open source basecaller for Oxford Nanopore sequencing data

M David, LJ Dursi, D Yao, PC Boutros… - …, 2017 - academic.oup.com
Abstract Motivation The highly portable Oxford Nanopore MinION sequencer has enabled
new applications of genome sequencing directly in the field. However, the MinION currently …

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy

W de Koning, M Miladi, S Hiltemann, A Heikema… - …, 2020 - academic.oup.com
Background Long-read sequencing can be applied to generate very long contigs and even
completely assembled genomes at relatively low cost and with minimal sample preparation …

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles

RM Leggett, D Heavens, M Caccamo, MD Clark… - …, 2016 - academic.oup.com
Abstract Motivation: The Oxford Nanopore MinION sequencer, currently in pre-release
testing through the MinION Access Programme (MAP), promises long reads in real-time from …