[HTML][HTML] Molecular docking using chimera and autodock vina software for nonbioinformaticians

SS Butt, Y Badshah, M Shabbir… - JMIR Bioinformatics and …, 2020 - bioinform.jmir.org
In the field of drug discovery, many methods of molecular modeling have been employed to
study complex biological and chemical systems. Experimental strategies are integrated with …

Docking with swissdock

G Bitencourt-Ferreira, WF de Azevedo - Docking screens for drug …, 2019 - Springer
Protein-ligand docking simulation is central in drug design and development. Therefore, the
development of web servers intended to docking simulations is of pivotal importance …

Role of autodock vina in PyRx molecular docking

RP Pawar, SH Rohane - 2021 - indianjournals.com
Molecular docking has been widely employed as a fast and inexpensive technique in past
decades, both in academic and industrial setting. In current situation molecular docking …

[PDF][PDF] Ligand docking and binding site analysis with pymol and autodock/vina

MA Rauf, S Zubair, A Azhar - International Journal of Basic and …, 2015 - researchgate.net
Docking of various therapeutically important chemical entities to the specific target sites
offers a meaningful strategy that may have tremendous scope in a drug design process. For …

InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening

T Mohammad, Y Mathur, MI Hassan - Briefings in Bioinformatics, 2021 - academic.oup.com
Exploring protein–ligand interactions is a subject of immense interest, as it provides deeper
insights into molecular recognition, mechanism of interaction and subsequent functions …

DockingApp: a user friendly interface for facilitated docking simulations with AutoDock Vina

E Di Muzio, D Toti, F Polticelli - Journal of Computer-Aided Molecular …, 2017 - Springer
Molecular docking is a powerful technique that helps uncover the structural and energetic
bases of the interaction between macromolecules and substrates, endogenous and …

Molecular docking: principles, advances, and its applications in drug discovery

MT Muhammed, E Aki-Yalcin - Letters in Drug Design & …, 2024 - ingentaconnect.com
Molecular docking is a structure-based computational method that generates the binding
pose and affinity between ligands and targets. There are many powerful docking programs …

AUDocker LE: A GUI for virtual screening with AUTODOCK Vina

G Sandeep, KP Nagasree, M Hanisha, MMK Kumar - BMC research notes, 2011 - Springer
Background AUTODOCK Vina is an open-source program which is steadfast and authentic
to perform docking simulations. Though, Auto Dock Tools can help perform docking …

Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser

Y Kochnev, E Hellemann, KC Cassidy… - …, 2020 - academic.oup.com
Motivation Molecular docking is a computational technique for predicting how a small
molecule might bind a macromolecular target. Among docking programs, AutoDock Vina is …

PSOVina: The hybrid particle swarm optimization algorithm for protein–ligand docking

MCK Ng, S Fong, SWI Siu - Journal of bioinformatics and …, 2015 - World Scientific
Protein–ligand docking is an essential step in modern drug discovery process. The
challenge here is to accurately predict and efficiently optimize the position and orientation of …