Stochastic versus Stepwise Strategies for Quantitative Structure− Activity Relationship Generation How Much Effort May the Mining for Successful QSAR Models Take …

D Horvath, F Bonachera, V Solov'Ev… - Journal of chemical …, 2007 - ACS Publications
Descriptor selection in QSAR typically relies on a set of upfront working hypotheses in order
to boil down the initial descriptor set to a tractable size. Stepwise regression …

QSAR without borders

EN Muratov, J Bajorath, RP Sheridan… - Chemical Society …, 2020 - pubs.rsc.org
Prediction of chemical bioactivity and physical properties has been one of the most
important applications of statistical and more recently, machine learning and artificial …

The effect of noise on the predictive limit of QSAR models

SS Kolmar, CM Grulke - Journal of Cheminformatics, 2021 - Springer
A key challenge in the field of Quantitative Structure Activity Relationships (QSAR) is how to
effectively treat experimental error in the training and evaluation of computational models. It …

QSAR modeling: where have you been? Where are you going to?

A Cherkasov, EN Muratov, D Fourches… - Journal of medicinal …, 2014 - ACS Publications
Quantitative structure–activity relationship modeling is one of the major computational tools
employed in medicinal chemistry. However, throughout its entire history it has drawn both …

Experimental error, kurtosis, activity cliffs, and methodology: what limits the predictivity of quantitative structure–activity relationship models?

RP Sheridan, P Karnachi, M Tudor, Y Xu… - Journal of chemical …, 2020 - ACS Publications
Given a particular descriptor/method combination, some quantitative structure–activity
relationship (QSAR) datasets are very predictive by random-split cross-validation while …

Experimental errors in QSAR modeling sets: what we can do and what we cannot do

L Zhao, W Wang, A Sedykh, H Zhu - ACS omega, 2017 - ACS Publications
Numerous chemical data sets have become available for quantitative structure–activity
relationship (QSAR) modeling studies. However, the quality of different data sources may be …

Assessment and reproducibility of quantitative structure–activity relationship models by the nonexpert

M Patel, ML Chilton, A Sartini, L Gibson… - Journal of Chemical …, 2018 - ACS Publications
Model reliability is generally assessed and reported as an intrinsic component of
quantitative structure–activity relationship (QSAR) publications; it can be evaluated using …

Predictive quantitative structure–activity relationships modeling: development and validation of QSAR models

A Tropsha, A Golbraikh - Handbook of chemoinformatics …, 2010 - taylorfrancis.com
Validation Criteria of QSAR Models.......................................... 214 7.3 Validation of QSAR
Models: Y-Randomization.............................. 220 7.4 Validation of QSAR Models: Training …

Ensemble feature selection: consistent descriptor subsets for multiple QSAR models

D Dutta, R Guha, D Wild, T Chen - Journal of Chemical …, 2007 - ACS Publications
Selecting a small subset of descriptors from a large pool to build a predictive quantitative
structure− activity relationship (QSAR) model is an important step in the QSAR modeling …

Three useful dimensions for domain applicability in QSAR models using random forest

RP Sheridan - Journal of chemical information and modeling, 2012 - ACS Publications
One popular metric for estimating the accuracy of prospective quantitative structure–activity
relationship (QSAR) predictions is based on the similarity of the compound being predicted …